[Gnumed-devel] cannot start client installed from CVS

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[Gnumed-devel] cannot start client installed from CVS

From:	Jerzy Luszawski
Subject:	[Gnumed-devel] cannot start client installed from CVS
Date:	Thu, 31 Jul 2008 18:42:38 +0200
Hello,

After fresh install of CVS tree and successful bootstraping local database I 
cannot start the client GUI because of unhandled exception.
I navigate to directory ...../gnumed/client ,  execute gm-from-cvs.sh, the 
login window appears, I enter the password and try to connect to database 
(either 
local or public, doesn't matter), then window with unhandled exception appears.

Logs follow.

Note 1 - I installed all prerequisites as listed, including package 
gnumed-common, but not gnumed-client. Probably that's why some directories are 
missing, 
eg. /etc/gnumed and /usr/share/gnumed. Are they required when running from CVS?

Note 2 - I have no idea why it says  missing_config_file. I checked and file 
gm-from-cvs.conf exists. Putting the full path didn't help.

Note 3 - I can start the client from 3.0 rc1 tarball with no problems, its only 
when trying to start the version checked out from CVS.

I would appreciate some help, please.

Jerzy Luszawski

PS. I could not simply attach the whole log - are there any message length 
limits on this list?


------------------------ contents of error window
  File "wxpython/gnumed.py", line 380, in <module>
    gmGuiMain.main()
  File "/usr/local/gnumed/gnumed/Gnumed/wxpython/gmGuiMain.py", line 2603, in 
main
    app = gmApp(redirect = False, clearSigInt = False)
  File "/usr/lib/python2.5/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", line 
7836, in __init__
    self._BootstrapApp()
  File "/usr/lib/python2.5/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", line 
7433, in _BootstrapApp
    return _core_.PyApp__BootstrapApp(*args, **kwargs)
  File "/usr/local/gnumed/gnumed/Gnumed/wxpython/gmGuiMain.py", line 2197, in 
OnInit
    if not self.__establish_backend_connection():
  File "/usr/local/gnumed/gnumed/Gnumed/wxpython/gmGuiMain.py", line 2347, in 
__establish_backend_connection
    client_version = current_client_ver
  File "/usr/local/gnumed/gnumed/Gnumed/wxpython/gmAuthWidgets.py", line 166, 
in connect_to_database
    dlg.panel.save_state()
  File "/usr/local/gnumed/gnumed/Gnumed/wxpython/gmAuthWidgets.py", line 558, 
in save_state
    value = self._CBOX_user.GetValue()
  File "/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py", line 176, in 
set_option_in_INI_file
    sink = codecs.open(filename = sink_name, mode = 'wb', encoding = encoding)
  File "/usr/lib/python2.5/codecs.py", line 817, in open
    file = __builtin__.open(filename, mode, buffering)


-------------------------- gm-from-cvs.log
.
.
.
2008-07-31 17:36:29  ERROR     gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::_set_system_config_dir() 
#281): 
[gmPaths:system_config_dir]: invalid path [/etc/gnumed]
2008-07-31 17:36:29  ERROR     gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::_set_system_app_data_dir()
 #293): 
[gmPaths:system_app_data_dir]: invalid path [/usr/share/gnumed]
2008-07-31 17:36:29  DEBUG     gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::init_paths() #220): 
wxPython not available
2008-07-31 17:36:29  DEBUG     gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::__log_paths() #257): 
local application base 
dir: /usr/local/gnumed/gnumed/client
2008-07-31 17:36:29  DEBUG     gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::__log_paths() #258): 
current working 
dir: /usr/local/gnumed/gnumed/client
2008-07-31 17:36:29  DEBUG     gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::__log_paths() #259): user 
home dir: /home/jlu
2008-07-31 17:36:29  DEBUG     gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::__log_paths() #260): 
user-specific config 
dir: /home/jlu/.gnumed
2008-07-31 17:36:29  DEBUG     gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::__log_paths() #261): 
system-wide config 
dir: /usr/local/gnumed/gnumed/client
2008-07-31 17:36:29  DEBUG     gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::__log_paths() #262): 
system-wide application data 
dir: /usr/local/gnumed/gnumed/client
.
.
.
2008-07-31 17:36:29  INFO      gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::add_file_source() #337): 
file 
source "workbase": /usr/local/gnumed/gnumed/client/gnumed.conf (UTF8)
2008-07-31 17:36:29  ERROR     gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::add_file_source() #342): 
cannot open 
[/usr/local/gnumed/gnumed/client/gnumed.conf], keeping as dummy source
2008-07-31 17:36:29  INFO      gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::add_file_source() #337): 
file 
source "system": /usr/local/gnumed/gnumed/client/gnumed-client.conf (UTF8)
2008-07-31 17:36:29  ERROR     gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::add_file_source() #342): 
cannot open 
[/usr/local/gnumed/gnumed/client/gnumed-client.conf], keeping as dummy source
2008-07-31 17:36:29  INFO      gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::add_file_source() #337): 
file 
source "user": /home/jlu/.gnumed/gnumed.conf (UTF8)
2008-07-31 17:36:29  DEBUG     gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::parse_INI_stream() #195): 
parsing INI-style data stream 
[<open file u'/home/jlu/.gnumed/gnumed.conf', mode 'rUb' at 0x833a0b0>]
2008-07-31 17:36:29  INFO      gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::add_file_source() #337): 
file 
source "local": /usr/local/gnumed/gnumed/client/gnumed.conf (UTF8)
2008-07-31 17:36:29  ERROR     gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::add_file_source() #342): 
cannot open 
[/usr/local/gnumed/gnumed/client/gnumed.conf], keeping as dummy source
2008-07-31 17:36:29  DEBUG     gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::get() #310): option 
[cli::--conf-file] found in source [cli]
2008-07-31 17:36:29  INFO      gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::add_file_source() #337): 
file source "explicit": 
gm-from-cvs.conf (UTF8)
2008-07-31 17:36:29  DEBUG     gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::parse_INI_stream() #195): 
parsing INI-style data stream 
[<open file 'gm-from-cvs.conf', mode 'rUb' at 0x833a0b0>]
2008-07-31 17:36:29  INFO      gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::add_file_source() #337): 
file 
source "user-mime": /home/jlu/.gnumed/mime_type2file_extension.conf (UTF8)
2008-07-31 17:36:29  ERROR     gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::add_file_source() #342): 
cannot open 
[/home/jlu/.gnumed/mime_type2file_extension.conf], keeping as dummy source
2008-07-31 17:36:29  INFO      gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::add_file_source() #337): 
file 
source "system-mime": 
/usr/local/gnumed/gnumed/client/mime_type2file_extension.conf (UTF8)
2008-07-31 17:36:29  ERROR     gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::add_file_source() #342): 
cannot open 
[/usr/local/gnumed/gnumed/client/mime_type2file_extension.conf], keeping as 
dummy source
.
.
.
2008-07-31 17:36:30  ERROR     gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::_set_system_config_dir() 
#281): 
[gmPaths:system_config_dir]: invalid path [/etc/gnumed]
2008-07-31 17:36:30  ERROR     gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::_set_system_app_data_dir()
 #293): 
[gmPaths:system_app_data_dir]: invalid path [/usr/share/gnumed]
2008-07-31 17:36:30  INFO      gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::init_paths() #226): 
wxPython app name set to [gnumed]
2008-07-31 17:36:30  ERROR     gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::_set_system_config_dir() 
#281): 
[gmPaths:system_config_dir]: invalid path [/etc/gnumed]
2008-07-31 17:36:30  ERROR     gm.tools 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.py::_set_system_app_data_dir()
 #293): 
[gmPaths:system_app_data_dir]: invalid path [/usr/share/gnumed]
.
.
.
2008-07-31 17:36:43  DEBUG     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::__detect_client_timezone() 
#238): trying to detect 
timezone from system
2008-07-31 17:36:44  ERROR     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::__expand_timezone() #220): 
cannot expand 
timezone abbreviation [CEST]
Traceback (most recent call last):
  File "/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py", line 214, in 
__expand_timezone
    curs.execute(cmd, args)
  File "/usr/lib/python2.5/site-packages/psycopg2/extras.py", line 85, in 
execute
    return _cursor.execute(self, query, vars, async)
ProgrammingError: relation "pg_timezone_names" does not exist

2008-07-31 17:36:44  DEBUG     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::__detect_client_timezone() 
#254): candidates: 
['CEST']
2008-07-31 17:36:44  DEBUG     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::__validate_timezone() 
#173): validating time zone 
[CEST]
2008-07-31 17:36:44  ERROR     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::__validate_timezone() 
#188): failed to set time zone 
to [CEST]
2008-07-31 17:36:44  ERROR     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::__validate_timezone() 
#189): 
Traceback (most recent call last):
  File "/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py", line 182, in 
__validate_timezone
    curs.execute(cmd, args)
  File "/usr/lib/python2.5/site-packages/psycopg2/extras.py", line 85, in 
execute
    return _cursor.execute(self, query, vars, async)
ProgrammingError: unrecognized time zone name: "CEST"

2008-07-31 17:36:44  INFO      gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::__detect_client_timezone() 
#271): client system time 
zone detected as [02:00:00.00]
2008-07-31 17:36:44  DEBUG     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::get_raw_connection() 
#1023): access mode [READ 
ONLY]
2008-07-31 17:36:44  INFO      gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::set_default_login() #387): 
setting default login from 
[<Gnumed.pycommon.gmLoginInfo.LoginInfo instance at 0x8df888c>] to 
[<Gnumed.pycommon.gmLoginInfo.LoginInfo instance at 0x8df888c>]
2008-07-31 17:36:44  INFO      gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::set_default_login() #392): 
setting default DSN from 
[dbname=gnumed_v9 host=salaam.homeunix.com port=5432 user=any-doc 
password=any-doc sslmode=prefer] to [dbname=gnumed_v9 
host=salaam.homeunix.com port=5432 user=any-doc password=any-doc sslmode=prefer]
2008-07-31 17:36:44  INFO      gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::set_default_client_encoding()
 #155): setting default 
client encoding from [UTF8] to [UTF8]
2008-07-31 17:36:44  DEBUG     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::get_raw_connection() 
#1023): access mode [READ 
ONLY]
2008-07-31 17:36:44  DEBUG     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::get_connection() #1068): 
client string encoding 
[UTF8]
2008-07-31 17:36:44  DEBUG     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::get_connection() #1080): 
isolation level [read 
committed]
2008-07-31 17:36:44  DEBUG     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::get_connection() #1088): 
time zone [02:00:00.00]
2008-07-31 17:36:44  DEBUG     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::get_connection() #1094): 
datestyle [ISO]
2008-07-31 17:36:45  DEBUG     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::get_connection() #1099): 
sql_inheritance [on]
2008-07-31 17:36:45  INFO      gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::get_connection() #1108): 
PostgreSQL version 
(string): "PostgreSQL 8.1.11 on i486-pc-linux-gnu, compiled by GCC cc (GCC) 
4.1.2 20061115 (prerelease) (Debian 4.1.1-21)"
2008-07-31 17:36:45  ERROR     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::database_schema_compatible()
 #412): database 
schema version mismatch
2008-07-31 17:36:45  ERROR     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::database_schema_compatible()
 #413): expected: 
devel (not released, testing only)
2008-07-31 17:36:46  ERROR     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::database_schema_compatible()
 #414): detected: v9 
(0ca15cfa6f8700e8961b9f5215350571)
2008-07-31 17:36:46  DEBUG     gm.database 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.py::database_schema_compatible()
 #416): schema 
dump follows:
.
.
.
2008-07-31 17:36:47  DEBUG     gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::get() #310): option 
[internal::user_preferences_file] found 
in source [internal]
2008-07-31 17:36:47  DEBUG     gm.ui 
(/usr/local/gnumed/gnumed/Gnumed/wxpython/gmAuthWidgets.py::save_state() #552): 
saving login choices in 
[/home/jlu/.gnumed/gnumed.conf]
2008-07-31 17:36:47  DEBUG     gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::set_option_in_INI_file() 
#171): setting option "login" 
to "any-doc" in group [preferences]
2008-07-31 17:36:47  DEBUG     gm.cfg 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py::set_option_in_INI_file() 
#172): 
file: /home/jlu/.gnumed/gnumed.conf (utf8)
2008-07-31 17:36:47  DEBUG     gm.gui 
(/usr/local/gnumed/gnumed/Gnumed/wxpython/gmExceptionHandlingWidgets.py::handle_uncaught_exception_wx()
 
#45): unhandled exception caught:
Traceback (most recent call last):
  File "wxpython/gnumed.py", line 380, in <module>
    gmGuiMain.main()
  File "/usr/local/gnumed/gnumed/Gnumed/wxpython/gmGuiMain.py", line 2603, in 
main
    app = gmApp(redirect = False, clearSigInt = False)
  File "/usr/lib/python2.5/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", line 
7836, in __init__
    self._BootstrapApp()
  File "/usr/lib/python2.5/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", line 
7433, in _BootstrapApp
    return _core_.PyApp__BootstrapApp(*args, **kwargs)
  File "/usr/local/gnumed/gnumed/Gnumed/wxpython/gmGuiMain.py", line 2197, in 
OnInit
    if not self.__establish_backend_connection():
  File "/usr/local/gnumed/gnumed/Gnumed/wxpython/gmGuiMain.py", line 2347, in 
__establish_backend_connection
    client_version = current_client_ver
  File "/usr/local/gnumed/gnumed/Gnumed/wxpython/gmAuthWidgets.py", line 166, 
in connect_to_database
    dlg.panel.save_state()
  File "/usr/local/gnumed/gnumed/Gnumed/wxpython/gmAuthWidgets.py", line 558, 
in save_state
    value = self._CBOX_user.GetValue()
  File "/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py", line 176, in 
set_option_in_INI_file
    sink = codecs.open(filename = sink_name, mode = 'wb', encoding = encoding)
  File "/usr/lib/python2.5/codecs.py", line 817, in open
    file = __builtin__.open(filename, mode, buffering)
IOError: [Errno 2] No such file or directory: 
u'./home/jlu/.gnumed/gnumed.conf.gmCfg2.new.conf'
2008-07-31 17:36:47  ERROR     gm.gui 
(/usr/local/gnumed/gnumed/Gnumed/wxpython/gmExceptionHandlingWidgets.py::handle_uncaught_exception_wx()
 
#76): enabling debug mode
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #148): 
stack trace follows:
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #149): 
(locals by frame, outmost 
frame first)
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #155): 
>>> execution frame 
[<module>] in [wxpython/gnumed.py] at line 380 <<<
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165): 
_known_short_options = h?
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
check_help_request = 
<function check_help_request at 0x821b09c>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
     _old_sig_term = None
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):  
_known_long_options = 
[u'debug', u'slave', u'profile=', u'text-domain=', u'log-file=', u'conf-file=', 
u'lang-gettext=', u'override-schema-check', u'help']
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
            gmI18N = 
<module 'Gnumed.pycommon.gmI18N' from 
'/usr/local/gnumed/gnumed/Gnumed/pycommon/gmI18N.pyc'>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165): 
setup_signal_handlers = 
<function setup_signal_handlers at 0x821b10c>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
         setup_cli = <function 
setup_cli at 0x81a56bc>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
            gmLog2 = 
<module 'Gnumed.pycommon.gmLog2' from 
'/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.pyc'>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
         gmGuiMain = 
<module 'Gnumed.wxpython.gmGuiMain' from 
'/usr/local/gnumed/gnumed/Gnumed/wxpython/gmGuiMain.pyc'>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
     setup_logging = 
<function setup_logging at 0x81a5374>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
        gmDateTime = 
<module 'Gnumed.pycommon.gmDateTime' from 
'/usr/local/gnumed/gnumed/Gnumed/pycommon/gmDateTime.pyc'>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
       __version__ = 
$Revision: 1.141 $
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
      setup_locale = 
<function setup_locale at 0x821b064>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
      profile_file = None
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
       __license__ = GPL 
(details at http://www.gnu.org)
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
      __builtins__ = 
<module '__builtin__' (built-in)>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
          __file__ = 
wxpython/gnumed.py
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
   setup_date_time = 
<function setup_date_time at 0x821b224>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
        __author__ = H. Herb 
<address@hidden>, K. Hilbert <address@hidden>, I. Haywood <address@hidden>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
               sys = 
<module 'sys' (built-in)>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):  
missing_config_file = 
GNUmed startup: Missing configuration file.
-------------------------------------------

You explicitely specified a configuration file
on the command line:

        --conf-file=%s

The file does not exist, however.

2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
           gmHooks = 
<module 'Gnumed.pycommon.gmHooks' from 
'/usr/local/gnumed/gnumed/Gnumed/pycommon/gmHooks.pyc'>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
           gmTools = 
<module 'Gnumed.pycommon.gmTools' from 
'/usr/local/gnumed/gnumed/Gnumed/pycommon/gmTools.pyc'>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
              _log = 
<logging.Logger instance at 0x81aeb2c>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
          __name__ = __main__
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
             gmPG2 = 
<module 'Gnumed.pycommon.gmPG2' from 
'/usr/local/gnumed/gnumed/Gnumed/pycommon/gmPG2.pyc'>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
  shutdown_backend = 
<function shutdown_backend at 0x821b2cc>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
   handle_sig_term = 
<function handle_sig_term at 0x821b144>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):  
import_error_sermon = 
GNUmed startup: Cannot load GNUmed Python modules !
---------------------------------------------------
CRITICAL ERROR: Program halted.

Please make sure you have:

 1) the required third-party Python modules installed
 2) the GNUmed Python modules linked or installed into site-packages/
    (if you do not run from a CVS tree the installer should have taken care of 
that)
 3) your PYTHONPATH environment variable set up correctly

sys.path is currently set to:

 /usr/local/gnumed/gnumed/client/wxpython
 /usr/local/gnumed/gnumed/client
 /usr/local/gnumed/gnumed
 /usr/lib/python25.zip
 /usr/lib/python2.5
 /usr/lib/python2.5/plat-linux2
 /usr/lib/python2.5/lib-tk
 /usr/lib/python2.5/lib-dynload
 /usr/local/lib/python2.5/site-packages
 /usr/lib/python2.5/site-packages
 /usr/lib/python2.5/site-packages/Numeric
 /usr/lib/python2.5/site-packages/PIL
 /var/lib/python-support/python2.5
 /var/lib/python-support/python2.5/gtk-2.0
 /usr/lib/python2.5/site-packages/wx-2.8-gtk2-unicode

If you are running from a copy of the CVS tree make sure you
did run gnumed/check-prerequisites.sh with good results.

If you still encounter errors after checking the above
requirements please ask on the mailing list.

2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
     setup_backend = 
<function setup_backend at 0x821b294>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
           logging = 
<module 'logging' from '/usr/lib/python2.5/logging/__init__.pyc'>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
         setup_cfg = 
<function setup_cfg at 0x821b25c>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165): 
setup_console_exception_handler = <function setup_console_exception_handler at 
0x81a55a4>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
            signal = 
<module 'signal' (built-in)>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
  shutdown_logging = 
<function shutdown_logging at 0x821b304>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165): 
setup_paths_and_files = 
<function setup_paths_and_files at 0x821b0d4>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
              _cfg = 
<Gnumed.pycommon.gmCfg2.gmCfgData object at 0x81ae56c>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
                os = 
<module 'os' from '/usr/lib/python2.5/os.pyc'>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #155): 
>>> execution frame [main] 
in [/usr/local/gnumed/gnumed/Gnumed/wxpython/gmGuiMain.py] at line 2603 <<<
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #155): 
>>> execution frame 
[__init__] in 
[/usr/lib/python2.5/site-packages/wx-2.8-gtk2-unicode/wx/_core.py] at line 7836 
<<<
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
          redirect = False
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
       clearSigInt = False
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
              self = 
<Gnumed.wxpython.gmGuiMain.gmApp; proxy of <Swig Object of type 'wxPyApp *' at 
0x858d210> >
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
     useBestVisual = False
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
          filename = None
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #155): 
>>> execution frame 
[_BootstrapApp] in 
[/usr/lib/python2.5/site-packages/wx-2.8-gtk2-unicode/wx/_core.py] at line 7433 
<<<
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
              args = 
(<Gnumed.wxpython.gmGuiMain.gmApp; proxy of <Swig Object of type 'wxPyApp *' at 
0x858d210> >,)
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
            kwargs = {}
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #155): 
>>> execution frame 
[OnInit] in [/usr/local/gnumed/gnumed/Gnumed/wxpython/gmGuiMain.py] at line 
2197 <<<
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
             paths = 
<Gnumed.pycommon.gmTools.gmPaths object at 0x8394c2c>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
              self = 
<Gnumed.wxpython.gmGuiMain.gmApp; proxy of <Swig Object of type 'wxPyApp *' at 
0x858d210> >
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #155): 
>>> execution frame 
[__establish_backend_connection] in 
[/usr/local/gnumed/gnumed/Gnumed/wxpython/gmGuiMain.py] at line 2347 <<<
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
          override = True
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
              self = 
<Gnumed.wxpython.gmGuiMain.gmApp; proxy of <Swig Object of type 'wxPyApp *' at 
0x858d210> >
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
     gmAuthWidgets = 
<module 'Gnumed.wxpython.gmAuthWidgets' from 
'/usr/local/gnumed/gnumed/Gnumed/wxpython/gmAuthWidgets.pyc'>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #155): 
>>> execution frame 
[connect_to_database] in 
[/usr/local/gnumed/gnumed/Gnumed/wxpython/gmAuthWidgets.py] at line 166 <<<
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
               dsn = 
dbname=gnumed_v9 host=salaam.homeunix.com port=5432 user=any-doc 
password=any-doc sslmode=prefer
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
   require_version = False
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
               dlg = 
<Gnumed.wxpython.gmAuthWidgets.cLoginDialog; proxy of <Swig Object of type 
'wxDialog *' at 0x8ea63a0> >
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
  expected_version = devel
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
     expected_hash = not 
released, testing only
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
        compatible = False
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
         connected = True
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
           attempt = 0
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
             login = 
<Gnumed.pycommon.gmLoginInfo.LoginInfo instance at 0x8df888c>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
    client_version = CVS 
HEAD
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
              conn = 
<connection object at 0x8342e6c; dsn: 'dbname=gnumed_v9 
host=salaam.homeunix.com port=5432 user=any-doc password=xxxxxxx 
sslmode=prefer', 
closed: 0>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
      max_attempts = 3
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #155): 
>>> execution frame 
[save_state] in [/usr/local/gnumed/gnumed/Gnumed/wxpython/gmAuthWidgets.py] at 
line 558 <<<
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
              self = 
<Gnumed.wxpython.gmAuthWidgets.cLoginPanel; proxy of <Swig Object of type 
'wxPanel *' at 0x8ec4518> >
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
        prefs_name 
= /home/jlu/.gnumed/gnumed.conf
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #155): 
>>> execution frame 
[set_option_in_INI_file] in 
[/usr/local/gnumed/gnumed/Gnumed/pycommon/gmCfg2.py] at line 176 <<<
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
               src = <open file 
u'/home/jlu/.gnumed/gnumed.conf', mode 'rUb' at 0x83f1920>
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
             group = 
preferences
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
            option = login
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
          encoding = utf8
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
             value = any-doc
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
          filename 
= /home/jlu/.gnumed/gnumed.conf
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
         sink_name 
= ./home/jlu/.gnumed/gnumed.conf.gmCfg2.new.conf
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #155): 
>>> execution frame [open] 
in [/usr/lib/python2.5/codecs.py] at line 817 <<<
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
          filename 
= ./home/jlu/.gnumed/gnumed.conf.gmCfg2.new.conf
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
              mode = wb
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
         buffering = 1
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
            errors = strict
2008-07-31 17:36:47  DEBUG     gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::log_stack_trace() #165):   
          encoding = utf8
2008-07-31 17:38:52  CRITICAL  gm.logging 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmLog2.py::flush() #116): -------- 
synced log file -------------------------------
2008-07-31 17:38:52  DEBUG     gm.shell 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmShellAPI.py::detect_external_binary()
 #20): detecting [xdg-open]
2008-07-31 17:38:52  DEBUG     gm.shell 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmShellAPI.py::detect_external_binary()
 #35): [which xdg-open] 
returned: /usr/bin/xdg-open
2008-07-31 17:38:52  INFO      gm.docs 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmMimeLib.py::_get_system_startfile_cmd()
 #181): detected local 
startfile cmd: [xdg-open %s]
2008-07-31 17:38:52  DEBUG     gm.shell 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
#68): shell command 
>>>xdg-open /usr/local/gnumed/gnumed/client/gm-from-cvs.log<<<
2008-07-31 17:38:52  DEBUG     gm.shell 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
#69): blocking: False
2008-07-31 17:38:52  DEBUG     gm.shell 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
#100): running shell 
command >>>xdg-open /usr/local/gnumed/gnumed/client/gm-from-cvs.log &<<<
2008-07-31 17:38:52  DEBUG     gm.shell 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
#102): os.system() returned: 
[0]
2008-07-31 17:38:52  DEBUG     gm.shell 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
#105): exited via exit(): True
2008-07-31 17:38:52  DEBUG     gm.shell 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
#107): exit code: [0]
2008-07-31 17:38:52  DEBUG     gm.shell 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
#109): dumped core: False
2008-07-31 17:38:52  DEBUG     gm.shell 
(/usr/local/gnumed/gnumed/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
#110): stopped by signal: 
False
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