[Gnumed-devel] Re: <bug>: Unsure if the -bugs list is down. This is u

[Karsten Hilbert]

On Mon, Jan 04, 2010 at 08:58:56PM +0100, Dr.Leonard Horatio McCoy wrote:

> user comment  : Unsure if the -bugs list is down. This is
> using Ubuntu 9.1.0 karmic with 0.6rc3 against Salaam v12 but
> if this is the old problem, is not not fixed as a result of
> a Salaam db update or does avoiding this problem also depend
> on client >rc3?

It shouldn't, no. Only the improved detection of failure.

It is exporting the template:

> 2010-01-04 11:56:32  DEBUG     gm.db 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmPG2.py::get_raw_connection() 
> #1196): new database connection, backend PID: 30565, readonly: True
> 2010-01-04 11:56:32  DEBUG     gm.db 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmPG2.py::get_raw_connection() 
> #1222): access mode [READ ONLY]
> 2010-01-04 11:56:33  DEBUG     gm.db 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmPG2.py::bytea2file_object() #840): 
> expecting bytea data of size: [2761] bytes
> 2010-01-04 11:56:33  DEBUG     gm.db 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmPG2.py::bytea2file_object() #841): 
> using chunk size of: [0] bytes
> 2010-01-04 11:56:33  DEBUG     gm.db 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmPG2.py::bytea2file_object() #846): 
> chunk size [0] bytes: retrieving all data at once
> 2010-01-04 11:56:33  DEBUG     gm.db 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmPG2.py::bytea2file_object() #852): 
> chunks to retrieve: [1]
> 2010-01-04 11:56:33  DEBUG     gm.db 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmPG2.py::bytea2file_object() #853): 
> remainder to retrieve: [0] bytes

Then substituting placeholders:

> 2010-01-04 11:56:34  DEBUG     gm.scripting 
> (/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMacro.py::__getitem__() #105): 
> replacing [$<client_version>$]
> 2010-01-04 11:56:34  DEBUG     gm.cfg 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmCfg2.py::get() #314): option 
> [internal::client_version] found in source [internal]
> 2010-01-04 11:56:34  DEBUG     gm.scripting 
> (/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMacro.py::__getitem__() #105): 
> replacing [$<today::%Y %B %d>$]
> 2010-01-04 11:56:34  DEBUG     gm.scripting 
> (/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMacro.py::__getitem__() #105): 
> replacing [$<current_provider>$]
> 2010-01-04 11:56:34  DEBUG     gm.scripting 
> (/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMacro.py::__getitem__() #105): 
> replacing [$<lastname>$]
> 2010-01-04 11:56:35  DEBUG     gm.scripting 
> (/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMacro.py::__getitem__() #105): 
> replacing [$<firstname>$]
> 2010-01-04 11:56:36  DEBUG     gm.scripting 
> (/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMacro.py::__getitem__() #105): 
> replacing [$<date_of_birth::%Y %B %d>$]
> 2010-01-04 11:56:36  DEBUG     gm.scripting 
> (/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMacro.py::__getitem__() #105): 
> replacing [$<adr_street::home>$]
> 2010-01-04 11:56:37  DEBUG     gm.scripting 
> (/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMacro.py::__getitem__() #105): 
> replacing [$<adr_number::home>$]
> 2010-01-04 11:56:39  DEBUG     gm.scripting 
> (/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMacro.py::__getitem__() #105): 
> replacing [$<adr_postcode::home>$]
> 2010-01-04 11:56:40  DEBUG     gm.scripting 
> (/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMacro.py::__getitem__() #105): 
> replacing [$<adr_location::home>$]
> 2010-01-04 11:56:42  DEBUG     gm.scripting 
> (/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMacro.py::__getitem__() #105): 
> replacing [$<current_meds::%(brand)s %(preparation)s & %(strength)s & 
> %(schedule)s & {\footnotesize %(aim)s} \tabularnewline {\footnotesize 
> (%(substance)s)} & \multicolumn{3}{l}{{\footnotesize %(notes)s}} \hfill 
> \vline \tabularnewline \hline >$]
> 2010-01-04 11:56:42  DEBUG     gm.scripting 
> (/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMacro.py::__getitem__() #105): 
> replacing [$<allergies::%(descriptor)s & %(l10n_type)s & {\footnotesize 
> %(reaction)s} \tabularnewline \hline >$]

Generating PDF:

> 2010-01-04 11:56:43  DEBUG     gm.forms 
> (/home/jbusser/gm/06rc3/Gnumed/business/gmForms.py::generate_output() #606): 
> ignoring <format> directive [None], generating PDF
> 2010-01-04 11:56:43  DEBUG     gm.forms 
> (/home/jbusser/gm/06rc3/Gnumed/business/gmForms.py::generate_output() #610): 
> LaTeX sandbox directory: [/home/jbusser/.gnumed/tmp/gm-L-Template-9eroup]
> 2010-01-04 11:56:43  DEBUG     gm.forms 
> (/home/jbusser/gm/06rc3/Gnumed/business/gmForms.py::generate_output() #613): 
> CWD: [/home/jbusser/gm/06rc3/client]

With the help of pdflatex:

> 2010-01-04 11:56:43  DEBUG     gm.shell 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
> #79): shell command >>>pdflatex -interaction nonstopmode 
> /home/jbusser/.gnumed/tmp/gm-L-Template-9eroup/gm-L-Template-9eroup-instance.tex<<<
> 2010-01-04 11:56:43  DEBUG     gm.shell 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
> #80): blocking: True
> 2010-01-04 11:56:43  INFO      gm.shell 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
> #111): running shell command >>>pdflatex -interaction nonstopmode 
> /home/jbusser/.gnumed/tmp/gm-L-Template-9eroup/gm-L-Template-9eroup-instance.tex<<<
> 2010-01-04 11:56:43  DEBUG     gm.shell 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
> #113): os.system() returned: [32512]
> 2010-01-04 11:56:43  DEBUG     gm.shell 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
> #116): exited via exit(): True

Which, however, fails:

> 2010-01-04 11:56:43  DEBUG     gm.shell 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
> #118): exit code: [127]
> 2010-01-04 11:56:43  DEBUG     gm.shell 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
> #120): dumped core: False
> 2010-01-04 11:56:43  DEBUG     gm.shell 
> (/home/jbusser/gm/06rc3/Gnumed/pycommon/gmShellAPI.py::run_command_in_shell() 
> #121): stopped by signal: False

Thereby failing to produce (and thus find) a PDF:

> 2010-01-04 11:56:43  DEBUG     gm.gui 
> (/home/jbusser/gm/06rc3/Gnumed/wxpython/gmExceptionHandlingWidgets.py::handle_uncaught_exception_wx()
>  #49): unhandled exception caught:
> Traceback (most recent call last):
>   File "/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMedicationWidgets.py", line 
> 1282, in _on_print_button_pressed
>     self._grid_substances.print_medication_list()
>   File "/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMedicationWidgets.py", line 
> 1056, in print_medication_list
>     print_medication_list(parent = self)
>   File "/home/jbusser/gm/06rc3/Gnumed/wxpython/gmMedicationWidgets.py", line 
> 752, in print_medication_list
>     pdf_name = meds_list.generate_output(cleanup = True)
>   File "/home/jbusser/gm/06rc3/Gnumed/business/gmForms.py", line 628, in 
> generate_output
>     shutil.move(pdf_name, os.path.split(self.instance_filename)[0])
>   File "/usr/lib/python2.6/shutil.py", line 264, in move
>     copy2(src, real_dst)
>   File "/usr/lib/python2.6/shutil.py", line 99, in copy2
>     copyfile(src, dst)
>   File "/usr/lib/python2.6/shutil.py", line 52, in copyfile
>     fsrc = open(src, 'rb')
> IOError: [Errno 2] No such file or directory: 
> u'/home/jbusser/.gnumed/tmp/gm-L-Template-9eroup/gm-L-Template-9eroup-instance.pdf'

We need to find out why generating the PDF fails for you.

What is the LaTeX console output during PDF generation ?

Can you email me the template you use ?

The code in CVS will leave behind the sandbox directory if
an error occurs during pdflatex.

Karsten
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