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16/20: gnu: Add r-bigmemoryextras.
From: |
guix-commits |
Subject: |
16/20: gnu: Add r-bigmemoryextras. |
Date: |
Tue, 17 Dec 2019 14:02:34 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 820373dbc82dfccf0edd779a4ab4b68672432a2d
Author: Ricardo Wurmus <address@hidden>
Date: Tue Dec 17 19:48:21 2019 +0100
gnu: Add r-bigmemoryextras.
* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
---
gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f388f16..0e817a1 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6783,3 +6783,35 @@ reconstruction databases. The package facilitates
@dfn{flux balance
analysis} (FBA) and the sampling of feasible flux distributions. Metabolic
networks and estimated fluxes can be visualized with hypergraphs.")
(license license:gpl3+)))
+
+(define-public r-bigmemoryextras
+ (package
+ (name "r-bigmemoryextras")
+ (version "1.34.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "bigmemoryExtras" version))
+ (sha256
+ (base32
+ "17dk7c44ikphcrpi8hnxyvlmj30qmj098kc0ihfi69bp9rw1cibq"))))
+ (properties
+ `((upstream-name . "bigmemoryExtras")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bigmemory" ,r-bigmemory)))
+ (home-page "https://github.com/phaverty/bigmemoryExtras")
+ (synopsis "Extension of the bigmemory package")
+ (description
+ "This package defines a @code{BigMatrix} @code{ReferenceClass} which adds
+safety and convenience features to the @code{filebacked.big.matrix} class from
+the @code{bigmemory} package. @code{BigMatrix} protects against segfaults by
+monitoring and gracefully restoring the connection to on-disk data and it also
+protects against accidental data modification with a filesystem-based
+permissions system. Utilities are provided for using @code{BigMatrix}-derived
+classes as @code{assayData} matrices within the @code{Biobase} package's
+@code{eSet} family of classes. @code{BigMatrix} provides some optimizations
+related to attaching to, and indexing into, file-backed matrices with
+dimnames. Additionally, the package provides a @code{BigMatrixFactor} class,
+a file-backed matrix with factor properties.")
+ (license license:artistic2.0)))
- branch master updated (328dd9b -> 29fd736), guix-commits, 2019/12/17
- 05/20: gnu: Add r-shinycssloaders., guix-commits, 2019/12/17
- 02/20: gnu: Add r-poibin., guix-commits, 2019/12/17
- 01/20: gnu: Add libsbml., guix-commits, 2019/12/17
- 08/20: gnu: Add r-bgx., guix-commits, 2019/12/17
- 03/20: gnu: Add r-diagram., guix-commits, 2019/12/17
- 07/20: gnu: Add r-bgmix., guix-commits, 2019/12/17
- 18/20: gnu: Add r-chemminer., guix-commits, 2019/12/17
- 16/20: gnu: Add r-bigmemoryextras.,
guix-commits <=
- 14/20: gnu: Add r-hyperdraw., guix-commits, 2019/12/17
- 13/20: gnu: Add r-hypergraph., guix-commits, 2019/12/17
- 17/20: gnu: Add r-bigpint., guix-commits, 2019/12/17
- 20/20: gnu: Add r-biobroom., guix-commits, 2019/12/17
- 15/20: gnu: Add r-biggr., guix-commits, 2019/12/17
- 11/20: gnu: Add r-bifet., guix-commits, 2019/12/17
- 19/20: gnu: Add r-bioassayr., guix-commits, 2019/12/17
- 12/20: gnu: Add r-rsbml., guix-commits, 2019/12/17
- 10/20: gnu: Add r-bicare., guix-commits, 2019/12/17
- 04/20: gnu: Add r-lim., guix-commits, 2019/12/17