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11/20: gnu: Add r-bifet.
From: |
guix-commits |
Subject: |
11/20: gnu: Add r-bifet. |
Date: |
Tue, 17 Dec 2019 14:02:33 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 40fe63ad8a3578a2a7090ee18fcb3d35096ba8c8
Author: Ricardo Wurmus <address@hidden>
Date: Tue Dec 17 19:47:19 2019 +0100
gnu: Add r-bifet.
* gnu/packages/bioconductor.scm (r-bifet): New variable.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 896d451..beb46c9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6650,3 +6650,31 @@ algorithm which is more efficient for larger data sets.")
"This is a package for biclustering analysis and exploration of
results.")
(license license:gpl2)))
+
+(define-public r-bifet
+ (package
+ (name "r-bifet")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BiFET" version))
+ (sha256
+ (base32
+ "0ck1d6hxd4f40hfz8p2z5xmjbz79yhrf6fisjka2xzk5v9fm4p4k"))))
+ (properties `((upstream-name . "BiFET")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genomicranges" ,r-genomicranges)
+ ("r-poibin" ,r-poibin)))
+ (home-page "https://bioconductor.org/packages/BiFET")
+ (synopsis "Bias-free footprint enrichment test")
+ (description
+ "BiFET identifies @dfn{transcription factors} (TFs) whose footprints are
+over-represented in target regions compared to background regions after
+correcting for the bias arising from the imbalance in read counts and GC
+contents between the target and background regions. For a given TF k, BiFET
+tests the null hypothesis that the target regions have the same probability of
+having footprints for the TF k as the background regions while correcting for
+the read count and GC content bias.")
+ (license license:gpl3)))
- 08/20: gnu: Add r-bgx., (continued)
- 08/20: gnu: Add r-bgx., guix-commits, 2019/12/17
- 03/20: gnu: Add r-diagram., guix-commits, 2019/12/17
- 07/20: gnu: Add r-bgmix., guix-commits, 2019/12/17
- 18/20: gnu: Add r-chemminer., guix-commits, 2019/12/17
- 16/20: gnu: Add r-bigmemoryextras., guix-commits, 2019/12/17
- 14/20: gnu: Add r-hyperdraw., guix-commits, 2019/12/17
- 13/20: gnu: Add r-hypergraph., guix-commits, 2019/12/17
- 17/20: gnu: Add r-bigpint., guix-commits, 2019/12/17
- 20/20: gnu: Add r-biobroom., guix-commits, 2019/12/17
- 15/20: gnu: Add r-biggr., guix-commits, 2019/12/17
- 11/20: gnu: Add r-bifet.,
guix-commits <=
- 19/20: gnu: Add r-bioassayr., guix-commits, 2019/12/17
- 12/20: gnu: Add r-rsbml., guix-commits, 2019/12/17
- 10/20: gnu: Add r-bicare., guix-commits, 2019/12/17
- 04/20: gnu: Add r-lim., guix-commits, 2019/12/17
- 06/20: gnu: Add r-rsvg., guix-commits, 2019/12/17
- 09/20: gnu: Add r-bhc., guix-commits, 2019/12/17