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09/20: gnu: Add r-bhc.
From: |
guix-commits |
Subject: |
09/20: gnu: Add r-bhc. |
Date: |
Tue, 17 Dec 2019 14:02:33 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 6bd50acf41ef0a44703e7f7cb0d6065696ade69d
Author: Ricardo Wurmus <address@hidden>
Date: Tue Dec 17 19:47:00 2019 +0100
gnu: Add r-bhc.
* gnu/packages/bioconductor.scm (r-bhc): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0f33420..f84b609 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6600,3 +6600,29 @@ gene expression.")
"This package provides tools for Bayesian integrated analysis of
Affymetrix GeneChips.")
(license license:gpl2)))
+
+(define-public r-bhc
+ (package
+ (name "r-bhc")
+ (version "1.38.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BHC" version))
+ (sha256
+ (base32
+ "1bxx3jak8mgvay3j1xd59bb9j86pzl6hh5abxww9x1b7rswmy1jh"))))
+ (properties `((upstream-name . "BHC")))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/BHC/")
+ (synopsis "Bayesian hierarchical clustering")
+ (description
+ "The method implemented in this package performs bottom-up hierarchical
+clustering, using a Dirichlet Process (infinite mixture) to model uncertainty
+in the data and Bayesian model selection to decide at each step which clusters
+to merge. This avoids several limitations of traditional methods, for example
+how many clusters there should be and how to choose a principled distance
+metric. This implementation accepts multinomial (i.e. discrete, with 2+
+categories) or time-series data. This version also includes a randomised
+algorithm which is more efficient for larger data sets.")
+ (license license:gpl3)))
- 13/20: gnu: Add r-hypergraph., (continued)
- 13/20: gnu: Add r-hypergraph., guix-commits, 2019/12/17
- 17/20: gnu: Add r-bigpint., guix-commits, 2019/12/17
- 20/20: gnu: Add r-biobroom., guix-commits, 2019/12/17
- 15/20: gnu: Add r-biggr., guix-commits, 2019/12/17
- 11/20: gnu: Add r-bifet., guix-commits, 2019/12/17
- 19/20: gnu: Add r-bioassayr., guix-commits, 2019/12/17
- 12/20: gnu: Add r-rsbml., guix-commits, 2019/12/17
- 10/20: gnu: Add r-bicare., guix-commits, 2019/12/17
- 04/20: gnu: Add r-lim., guix-commits, 2019/12/17
- 06/20: gnu: Add r-rsvg., guix-commits, 2019/12/17
- 09/20: gnu: Add r-bhc.,
guix-commits <=