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21/323: gnu: Add r-apeglm.
From: |
guix-commits |
Subject: |
21/323: gnu: Add r-apeglm. |
Date: |
Mon, 7 Dec 2020 15:12:42 -0500 (EST) |
rekado pushed a commit to branch wip-r
in repository guix.
commit 7ebf7eb22b9860d7ef5fce7451a735422da67ccd
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Wed Nov 18 16:25:46 2020 +0100
gnu: Add r-apeglm.
* gnu/packages/bioconductor.scm (r-apeglm): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 482a930..56d8036 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1630,6 +1630,33 @@ for numerical computing (numerical integration,
optimization, etc.) and their
integration with @code{Rcpp}.")
(license license:gpl2+)))
+(define-public r-apeglm
+ (package
+ (name "r-apeglm")
+ (version "1.12.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "apeglm" version))
+ (sha256
+ (base32
+ "0pix1fhxk2q89p2745fgsmxwics9rf10l392qhw3rw6v6ynhims2"))))
+ (properties `((upstream-name . "apeglm")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-emdbook" ,r-emdbook)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppeigen" ,r-rcppeigen)
+ ("r-rcppnumerical" ,r-rcppnumerical)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/apeglm")
+ (synopsis "Approximate posterior estimation for GLM coefficients")
+ (description "This package provides Bayesian shrinkage estimators for
+effect sizes for a variety of GLM models, using approximation of the
+posterior for individual coefficients.")
+ (license license:gpl2)))
+
(define-public r-diffbind
(package
(name "r-diffbind")
- 81/323: gnu: r-a4reporting: Update to 1.38.0., (continued)
- 81/323: gnu: r-a4reporting: Update to 1.38.0., guix-commits, 2020/12/07
- 87/323: gnu: r-motifdb: Update to 1.32.0., guix-commits, 2020/12/07
- 93/323: gnu: r-abaenrichment: Update to 1.20.0., guix-commits, 2020/12/07
- 92/323: gnu: r-gofuncr: Update to 1.10.0., guix-commits, 2020/12/07
- 101/323: gnu: r-somaticsignatures: Update to 2.26.0., guix-commits, 2020/12/07
- 109/323: gnu: Add r-mscoreutils., guix-commits, 2020/12/07
- 123/323: gnu: r-rhisat2: Update to 1.6.0., guix-commits, 2020/12/07
- 11/323: gnu: r-affxparser: Update to 1.62.0., guix-commits, 2020/12/07
- 16/323: gnu: r-geneplotter: Update to 1.68.0., guix-commits, 2020/12/07
- 17/323: gnu: r-oligoclasses: Update to 1.52.0., guix-commits, 2020/12/07
- 21/323: gnu: Add r-apeglm.,
guix-commits <=
- 22/323: gnu: Add r-invgamma., guix-commits, 2020/12/07
- 24/323: gnu: Add r-mixsqp., guix-commits, 2020/12/07
- 25/323: gnu: Add r-ashr., guix-commits, 2020/12/07
- 28/323: gnu: r-multtest: Update to 2.46.0., guix-commits, 2020/12/07
- 33/323: gnu: r-cghcall: Update to 2.52.0., guix-commits, 2020/12/07
- 38/323: gnu: r-ctc: Update to 1.64.0., guix-commits, 2020/12/07
- 46/323: gnu: r-biocneighbors: Update to 1.8.0., guix-commits, 2020/12/07
- 29/323: gnu: r-graph: Update to 1.68.0., guix-commits, 2020/12/07
- 42/323: gnu: r-plgem: Update to 1.62.0., guix-commits, 2020/12/07
- 37/323: gnu: r-riboseqr: Update to 1.24.0., guix-commits, 2020/12/07