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301/323: gnu: r-rhdf5: Update to 2.34.0.
From: |
guix-commits |
Subject: |
301/323: gnu: r-rhdf5: Update to 2.34.0. |
Date: |
Mon, 7 Dec 2020 15:14:23 -0500 (EST) |
rekado pushed a commit to branch wip-r
in repository guix.
commit 9592883293d6bcd166414fda33e9ef9f752dcb83
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri Oct 30 15:59:56 2020 +0100
gnu: r-rhdf5: Update to 2.34.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.34.0.
[propagated-inputs]: Add r-rhdf5filters.
[arguments]: Avoid to have a plain directory on the list of libraries to
link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
---
gnu/packages/bioinformatics.scm | 18 +++++++++++++++---
1 file changed, 15 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d382890..1bc6b83 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9105,16 +9105,28 @@ HDF5 datasets.")
(define-public r-rhdf5
(package
(name "r-rhdf5")
- (version "2.32.3")
+ (version "2.34.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "rhdf5" version))
(sha256
(base32
- "0fnx60dpf6s2qwq48lg98g18g8k7wgm66pw0kamlbb7l2hnwycvf"))))
+ "0almr1vscrgj5g4dyrags131wia2pmdbdidlpskbgm44ha6hpmqi"))))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-linking
+ (lambda _
+ (substitute* "src/Makevars"
+ ;; This is to avoid having a plain directory on the list of
+ ;; libraries to link.
+ (("\\(RHDF5_LIBS\\)" match)
+ (string-append match "/libhdf5.a")))
+ #t)))))
(propagated-inputs
- `(("r-rhdf5lib" ,r-rhdf5lib)))
+ `(("r-rhdf5filters" ,r-rhdf5filters)
+ ("r-rhdf5lib" ,r-rhdf5lib)))
(inputs
`(("zlib" ,zlib)))
(native-inputs
- 238/323: gnu: r-summarizedexperiment: Update to 1.20.0., (continued)
- 238/323: gnu: r-summarizedexperiment: Update to 1.20.0., guix-commits, 2020/12/07
- 241/323: gnu: r-rtracklayer: Update to 1.50.0., guix-commits, 2020/12/07
- 242/323: gnu: r-genomicfeatures: Update to 1.42.1., guix-commits, 2020/12/07
- 255/323: gnu: r-annotationfilter: Update to 1.14.0., guix-commits, 2020/12/07
- 276/323: gnu: r-keggrest: Update to 1.30.0., guix-commits, 2020/12/07
- 279/323: gnu: r-complexheatmap: Update to 2.6.2., guix-commits, 2020/12/07
- 293/323: gnu: Add r-sparsematrixstats., guix-commits, 2020/12/07
- 294/323: gnu: r-genomationdata: Update to 1.22.0., guix-commits, 2020/12/07
- 296/323: gnu: r-genomicinteractions: Update to 1.24.0., guix-commits, 2020/12/07
- 299/323: gnu: r-singlecellexperiment: Update to 1.12.0., guix-commits, 2020/12/07
- 301/323: gnu: r-rhdf5: Update to 2.34.0.,
guix-commits <=
- 303/323: gnu: Add r-scuttle., guix-commits, 2020/12/07
- 40/323: gnu: r-glimma: Update to 2.0.0., guix-commits, 2020/12/07
- 49/323: gnu: r-chipexoqual: Update to 1.14.0., guix-commits, 2020/12/07
- 53/323: gnu: r-karyoploter: Update to 1.16.0., guix-commits, 2020/12/07
- 66/323: gnu: r-ioniser: Update to 2.14.0., guix-commits, 2020/12/07
- 55/323: gnu: r-ihw: Update to 1.18.0., guix-commits, 2020/12/07
- 98/323: gnu: r-ebimage: Update to 4.32.0., guix-commits, 2020/12/07
- 97/323: gnu: r-aucell: Update to 1.12.0., guix-commits, 2020/12/07
- 114/323: gnu: r-webbioc: Update to 1.62.0., guix-commits, 2020/12/07
- 121/323: gnu: r-rbowtie: Update to 1.30.0., guix-commits, 2020/12/07