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303/323: gnu: Add r-scuttle.
From: |
guix-commits |
Subject: |
303/323: gnu: Add r-scuttle. |
Date: |
Mon, 7 Dec 2020 15:14:24 -0500 (EST) |
rekado pushed a commit to branch wip-r
in repository guix.
commit 45c04225e393b795f1b9c59fa11d657cd7f65110
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Nov 21 10:23:56 2020 +0100
gnu: Add r-scuttle.
* gnu/packages/bioconductor.scm (r-scuttle): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7f188a4..3572b60 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8837,6 +8837,40 @@ factors for each cell, along with the usual metadata for
genes and
libraries.")
(license license:gpl3)))
+(define-public r-scuttle
+ (package
+ (name "r-scuttle")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scuttle" version))
+ (sha256
+ (base32
+ "1k8q3wzq6f6j6wkjp9fy9j214rv98kyvcxnpavk6blqgaxjqwdr6"))))
+ (properties `((upstream-name . "scuttle")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-beachmat" ,r-beachmat)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-delayedmatrixstats" ,r-delayedmatrixstats)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/scuttle")
+ (synopsis "Single-cell RNA-Seq analysis utilities")
+ (description
+ "This package provides basic utility functions for performing single-cell
+analyses, focusing on simple normalization, quality control and data
+transformations. It also provides some helper functions to assist development
+of other packages.")
+ (license license:gpl3)))
+
(define-public r-scater
(package
(name "r-scater")
- 241/323: gnu: r-rtracklayer: Update to 1.50.0., (continued)
- 241/323: gnu: r-rtracklayer: Update to 1.50.0., guix-commits, 2020/12/07
- 242/323: gnu: r-genomicfeatures: Update to 1.42.1., guix-commits, 2020/12/07
- 255/323: gnu: r-annotationfilter: Update to 1.14.0., guix-commits, 2020/12/07
- 276/323: gnu: r-keggrest: Update to 1.30.0., guix-commits, 2020/12/07
- 279/323: gnu: r-complexheatmap: Update to 2.6.2., guix-commits, 2020/12/07
- 293/323: gnu: Add r-sparsematrixstats., guix-commits, 2020/12/07
- 294/323: gnu: r-genomationdata: Update to 1.22.0., guix-commits, 2020/12/07
- 296/323: gnu: r-genomicinteractions: Update to 1.24.0., guix-commits, 2020/12/07
- 299/323: gnu: r-singlecellexperiment: Update to 1.12.0., guix-commits, 2020/12/07
- 301/323: gnu: r-rhdf5: Update to 2.34.0., guix-commits, 2020/12/07
- 303/323: gnu: Add r-scuttle.,
guix-commits <=
- 40/323: gnu: r-glimma: Update to 2.0.0., guix-commits, 2020/12/07
- 49/323: gnu: r-chipexoqual: Update to 1.14.0., guix-commits, 2020/12/07
- 53/323: gnu: r-karyoploter: Update to 1.16.0., guix-commits, 2020/12/07
- 66/323: gnu: r-ioniser: Update to 2.14.0., guix-commits, 2020/12/07
- 55/323: gnu: r-ihw: Update to 1.18.0., guix-commits, 2020/12/07
- 98/323: gnu: r-ebimage: Update to 4.32.0., guix-commits, 2020/12/07
- 97/323: gnu: r-aucell: Update to 1.12.0., guix-commits, 2020/12/07
- 114/323: gnu: r-webbioc: Update to 1.62.0., guix-commits, 2020/12/07
- 121/323: gnu: r-rbowtie: Update to 1.30.0., guix-commits, 2020/12/07
- 122/323: gnu: r-sgseq: Update to 1.24.0., guix-commits, 2020/12/07