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211/323: gnu: r-cytoml: Fix r-rhdf5libs linking.
From: |
guix-commits |
Subject: |
211/323: gnu: r-cytoml: Fix r-rhdf5libs linking. |
Date: |
Mon, 7 Dec 2020 15:13:50 -0500 (EST) |
rekado pushed a commit to branch wip-r
in repository guix.
commit 442114776233364b00bf18923edff3cb3a9ae6d1
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri Dec 4 05:07:38 2020 +0100
gnu: r-cytoml: Fix r-rhdf5libs linking.
* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
---
gnu/packages/bioconductor.scm | 11 +++++++++++
1 file changed, 11 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ce831af..2992045 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6426,6 +6426,17 @@ sequential way to mimic the manual gating strategy.")
"1d8x49aqc95x1vx456hya5r7mal80pj9l6wmr5x5pb5r8qyzz6yq"))))
(properties `((upstream-name . "CytoML")))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-linking
+ (lambda _
+ (substitute* "src/Makevars.in"
+ ;; This is to avoid having a plain directory on the list of
+ ;; libraries to link.
+ (("\\{h5lib\\}" match)
+ (string-append match "/libhdf5.a")))
+ #t)))))
(inputs
`(("libxml2" ,libxml2)))
(propagated-inputs
- 189/323: gnu: r-biocworkflowtools: Update to 1.16.0., (continued)
- 189/323: gnu: r-biocworkflowtools: Update to 1.16.0., guix-commits, 2020/12/07
- 190/323: gnu: r-biodist: Update to 1.62.0., guix-commits, 2020/12/07
- 183/323: gnu: r-multiassayexperiment: Update to 1.16.0., guix-commits, 2020/12/07
- 192/323: gnu: r-m3c: Update to 1.12.0., guix-commits, 2020/12/07
- 194/323: gnu: r-fourcseq: Update to 1.24.0., guix-commits, 2020/12/07
- 196/323: gnu: r-rgraphviz: Update to 2.34.0., guix-commits, 2020/12/07
- 195/323: gnu: r-preprocesscore: Update to 1.52.0., guix-commits, 2020/12/07
- 203/323: gnu: Add r-matrixgenerics., guix-commits, 2020/12/07
- 201/323: gnu: r-iranges: Update to 2.24.0., guix-commits, 2020/12/07
- 206/323: gnu: r-rhdf5lib: Update to 1.12.0., guix-commits, 2020/12/07
- 211/323: gnu: r-cytoml: Fix r-rhdf5libs linking.,
guix-commits <=
- 221/323: gnu: r-gostats: Update to 2.56.0., guix-commits, 2020/12/07
- 226/323: gnu: r-biocstyle: Update to 2.18.0., guix-commits, 2020/12/07
- 236/323: gnu: r-biostrings: Update to 2.58.0., guix-commits, 2020/12/07
- 259/323: gnu: r-sva: Update to 3.38.0., guix-commits, 2020/12/07
- 271/323: gnu: r-aroma-light: Update to 3.20.0., guix-commits, 2020/12/07
- 250/323: gnu: r-rhtslib: Update to 1.22.0., guix-commits, 2020/12/07
- 265/323: gnu: r-vsn: Update to 3.58.0., guix-commits, 2020/12/07
- 266/323: gnu: r-mzid: Update to 1.28.0., guix-commits, 2020/12/07
- 260/323: gnu: r-protgenerics: Update to 1.22.0., guix-commits, 2020/12/07
- 254/323: gnu: r-tximport: Update to 1.18.0., guix-commits, 2020/12/07