[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
10/14: gnu: Add r-biotip.
From: |
guix-commits |
Subject: |
10/14: gnu: Add r-biotip. |
Date: |
Tue, 7 Sep 2021 08:48:43 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit ccc1b9e5a1d2e61ba6518df07415752388e4a478
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Sep 7 14:38:54 2021 +0200
gnu: Add r-biotip.
* gnu/packages/bioconductor.scm (r-biotip): New variable.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1287307..0d9344f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14436,6 +14436,36 @@ expression data. The core algorithm is a
Wilcoxon-Mann-Whitney test that is
optimised for high performance.")
(license license:gpl3+)))
+(define-public r-biotip
+ (package
+ (name "r-biotip")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BioTIP" version))
+ (sha256
+ (base32
+ "1i6r8px0fmdjx8frpljppwql74mhx08ibvhs9y3qk91ck5h3f0js"))))
+ (properties `((upstream-name . "BioTIP")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cluster" ,r-cluster)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-hmisc" ,r-hmisc)
+ ("r-igraph" ,r-igraph)
+ ("r-mass" ,r-mass)
+ ("r-psych" ,r-psych)
+ ("r-stringr" ,r-stringr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/xyang2uchicago/BioTIP")
+ (synopsis "R package for characterization of biological tipping-point")
+ (description
+ "This package adopts tipping-point theory to transcriptome profiles to
+help unravel disease regulatory trajectory.")
+ (license license:gpl2)))
+
(define-public r-tximeta
(package
(name "r-tximeta")
- branch master updated (44db980 -> 5cfe5dd), guix-commits, 2021/09/07
- 02/14: gnu: Add r-biscuiteerdata., guix-commits, 2021/09/07
- 05/14: gnu: Add r-biomvrcns., guix-commits, 2021/09/07
- 11/14: gnu: Add r-biotmle., guix-commits, 2021/09/07
- 01/14: gnu: Add r-mus-musculus., guix-commits, 2021/09/07
- 03/14: gnu: Add r-mvcclass., guix-commits, 2021/09/07
- 10/14: gnu: Add r-biotip.,
guix-commits <=
- 07/14: gnu: Add r-bionet., guix-commits, 2021/09/07
- 04/14: gnu: Add r-biomvcclass., guix-commits, 2021/09/07
- 06/14: gnu: Add r-bionero., guix-commits, 2021/09/07
- 09/14: gnu: Add r-bioqc., guix-commits, 2021/09/07
- 14/14: gnu: Add r-biscuiteer., guix-commits, 2021/09/07
- 13/14: gnu: Add r-dmrseq., guix-commits, 2021/09/07
- 08/14: gnu: Add r-bionetstat., guix-commits, 2021/09/07
- 12/14: gnu: Add r-bsseq., guix-commits, 2021/09/07