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09/09: gnu: Add r-scseqcomm.
From: |
guix-commits |
Subject: |
09/09: gnu: Add r-scseqcomm. |
Date: |
Fri, 21 Jan 2022 09:54:52 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit ce291b193cadbd6926ddf31af2ac6ed8bd607f44
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Tue Jan 18 18:54:18 2022 +0100
gnu: Add r-scseqcomm.
* gnu/packages/bioinformatics.scm (r-scseqcomm): New variable.
---
gnu/packages/bioinformatics.scm | 50 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 50 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b0ea34fd6d..d6782f6fe6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7910,6 +7910,56 @@ of transcriptional heterogeneity among single cells.")
analyze genomic data resulting from various experiments.")
(license license:gpl2)))
+(define-public r-scseqcomm
+ (let ((commit "01076e703999f1a5aa76419d821b50aebe2b777a")
+ (revision "0"))
+ (package
+ (name "r-scseqcomm")
+ (version (git-version "0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://gitlab.com/sysbiobig/scseqcomm")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1fw5si47d6agnz5fibmp2b1sv08pbpwv1j71w57xbav9044i032q"))
+ ;; Delete bundled dependency.
+ (modules '((guix build utils)))
+ (snippet
+ '(delete-file-recursively "other_deps"))))
+ (build-system r-build-system)
+ (inputs
+ (list r-add2ggplot
+ r-chorddiag
+ r-doparallel
+ r-dplyr
+ r-foreach
+ ;;r-grid ;; listed in DESCRIPTION
+ r-gridextra
+ r-ggplot2
+ r-gtable
+ r-htmlwidgets
+ r-igraph
+ r-matrix
+ ;;r-methods ;; listed in DESCRIPTION
+ r-org-hs-eg-db
+ r-psych
+ r-rcolorbrewer
+ r-rlang
+ r-scico
+ r-tidygraph
+ r-topgo))
+ (native-inputs
+ (list r-knitr))
+ (home-page "https://gitlab.com/sysbiobig/scseqcomm")
+ (synopsis "Inter- and intra- cellular signaling from single cell
RNA-seq")
+ (description "This package is tools for analysing intercellular and
+intracellular signaling from single cell RNA-seq (scRNA-seq) data.")
+ (license license:gpl3))))
+
(define-public r-shaman
(let ((commit "d6944e8ac7bd1dbd5c6cec646eafc1d19d0ca96f")
(release "2.0")
- branch master updated (e4f1b96c73 -> ce291b193c), guix-commits, 2022/01/21
- 01/09: gnu: r-org-dr-eg-db: Update to 3.14.0., guix-commits, 2022/01/21
- 02/09: gnu: Add r-jetset., guix-commits, 2022/01/21
- 03/09: gnu: Add r-hgu133plus2-db., guix-commits, 2022/01/21
- 05/09: gnu: Add r-scico., guix-commits, 2022/01/21
- 09/09: gnu: Add r-scseqcomm.,
guix-commits <=
- 04/09: gnu: Add r-chorddiag., guix-commits, 2022/01/21
- 06/09: gnu: Add r-add2ggplot., guix-commits, 2022/01/21
- 07/09: gnu: Add r-rlist., guix-commits, 2022/01/21
- 08/09: gnu: Add r-icellnet., guix-commits, 2022/01/21