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08/09: gnu: Add r-icellnet.
From: |
guix-commits |
Subject: |
08/09: gnu: Add r-icellnet. |
Date: |
Fri, 21 Jan 2022 09:54:52 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit dac6b53c7e147f28e3834603b002b47ced092b47
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Tue Jan 18 18:54:17 2022 +0100
gnu: Add r-icellnet.
* gnu/packages/bioinformatics.scm (r-icellnet): New variable.
---
gnu/packages/bioinformatics.scm | 46 ++++++++++++++++++++++++++++++++++++++++-
1 file changed, 45 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7e28ae8ed1..b0ea34fd6d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -21,7 +21,7 @@
;;; Copyright © 2020 Bonface Munyoki Kilyungi <bonfacemunyoki@gmail.com>
;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
-;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
+;;; Copyright © 2021, 2022 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2021 Felix Gruber <felgru@posteo.net>
;;;
;;; This file is part of GNU Guix.
@@ -7788,6 +7788,50 @@ single-cell data.")
"This package is designed to streamline scATAC analyses in R.")
(license license:gpl2+))))
+(define-public r-icellnet
+ ;; v1.0 tagged in 2020, last commit contains many fixes.
+ ;; DESCRIPTION says Version: 0.0.0.9000.
+ (let ((commit "b9c05488fb8b5ea69bd560018966eaf4e25f82a")
+ (revision "0"))
+ (package
+ (name "r-icellnet")
+ (version (git-version "1.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/soumelis-lab/ICELLNET")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0cld7d6xqnvd0zpcpg3sx73an6vdc9divzywgnn6zxnqcd987cnw"))))
+ (build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'enter-dir
+ (lambda _ (chdir "icellnet"))))))
+ (propagated-inputs
+ (list r-annotationdbi
+ r-data-table
+ r-dplyr
+ r-ggplot2
+ r-hgu133plus2-db
+ r-jetset
+ r-psych
+ r-reshape2
+ r-rlist))
+ (home-page "https://github.com/soumelis-lab/ICELLNET")
+ (synopsis "Transcriptomic-based framework to dissect cell communication")
+ (description "This packages provides a a transcriptomic-based framework
+to dissect cell communication in a global manner. It integrates an original
+expert-curated database of ligand-receptor interactions taking into account
+multiple subunits expression. Based on transcriptomic profiles (gene
+expression), this package allows to compute communication scores between cells
+and provides several visualization modes that can be helpful to dig into
+cell-cell interaction mechanism and extend biological knowledge.")
+ (license license:gpl3))))
+
(define-public r-scde
(package
(name "r-scde")
- branch master updated (e4f1b96c73 -> ce291b193c), guix-commits, 2022/01/21
- 01/09: gnu: r-org-dr-eg-db: Update to 3.14.0., guix-commits, 2022/01/21
- 02/09: gnu: Add r-jetset., guix-commits, 2022/01/21
- 03/09: gnu: Add r-hgu133plus2-db., guix-commits, 2022/01/21
- 05/09: gnu: Add r-scico., guix-commits, 2022/01/21
- 09/09: gnu: Add r-scseqcomm., guix-commits, 2022/01/21
- 04/09: gnu: Add r-chorddiag., guix-commits, 2022/01/21
- 06/09: gnu: Add r-add2ggplot., guix-commits, 2022/01/21
- 07/09: gnu: Add r-rlist., guix-commits, 2022/01/21
- 08/09: gnu: Add r-icellnet.,
guix-commits <=