bug#25996: Sambamba

[Ricardo Wurmus]

Pjotr Prins <address@hidden> writes:

> Sambamba just got a new release 0.6.6. I have a package here
>
>   
> https://github.com/genenetwork/guix-bioinformatics/blob/master/gn/packages/sambamba.scm
>
> which deals with undeaD and actually enforces dependencies of
> externally called samtools and bcftools. 0.6.6 fixes a nasty bug, but
> requires a patched version of the ldc compiler (not in GNU Guix):
>
>   
> https://github.com/genenetwork/guix-bioinformatics/blob/master/gn/packages/ldc.scm#L119
>   
> https://github.com/genenetwork/guix-bioinformatics/blob/master/ldc-druntime-finiTLSRanges.patch

Oh, I see.  I tried to update my package after seeing your message, but
requiring a patched version of the compiler makes this more challenging.

> I suggest we add 0.6.5 to Guix now and update to the newer version when
> the dust settles.

I pushed 0.6.5 to master with commit 5ded35d89.  Thanks for taking a
look!

--
Ricardo

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