[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
[bug#32642] [PATCH 16/16] gnu: Add python-pygenometracks.
From: |
Ricardo Wurmus |
Subject: |
[bug#32642] [PATCH 16/16] gnu: Add python-pygenometracks. |
Date: |
Wed, 5 Sep 2018 16:07:28 +0200 |
* gnu/packages/bioinformatics.scm (python-pygenometracks): New variable.
---
gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ccc3ed26a..97e8e1b07 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13715,3 +13715,34 @@ the visualization of multiple contact matrices along
with other types of data
like genes, compartments, ChIP-seq coverage tracks (and in general any type of
genomic scores), long range contacts and the visualization of viewpoints.")
(license license:gpl3)))
+
+(define-public python-pygenometracks
+ (package
+ (name "python-pygenometracks")
+ (version "2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pyGenomeTracks" version))
+ (sha256
+ (base32
+ "1fws6bqsyy9kj3qiabhkqx4wd4i775gsxnhszqd3zg7w67sc1ic5"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-configparser" ,python-configparser)
+ ("python-future" ,python-future)
+ ("python-hicexplorer" ,python-hicexplorer)
+ ("python-intervaltree" ,python-intervaltree)
+ ("python-matplotlib" ,python-matplotlib)
+ ("python-numpy" ,python-numpy)
+ ("python-pybigwig" ,python-pybigwig)))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)))
+ (home-page "https://pygenometracks.readthedocs.io")
+ (synopsis "Program and library to plot beautiful genome browser tracks")
+ (description
+ "This package aims to produce high-quality genome browser tracks that
+are highly customizable. Currently, it is possible to plot: bigwig, bed (many
+options), bedgraph, links (represented as arcs), and Hi-C matrices.
+pyGenomeTracks can make plots with or without Hi-C data.")
+ (license license:gpl3+)))
--
2.18.0
- [bug#32642] [PATCH 04/16] gnu: Add python-cytoolz., (continued)
- [bug#32642] [PATCH 06/16] gnu: Add python-cloudpickle., Ricardo Wurmus, 2018/09/05
- [bug#32642] [PATCH 08/16] gnu: Add python-blosc., Ricardo Wurmus, 2018/09/05
- [bug#32642] [PATCH 07/16] gnu: Add python-locket., Ricardo Wurmus, 2018/09/05
- [bug#32642] [PATCH 09/16] gnu: Add python-partd., Ricardo Wurmus, 2018/09/05
- [bug#32642] [PATCH 10/16] gnu: Add python-dask., Ricardo Wurmus, 2018/09/05
- [bug#32642] [PATCH 14/16] gnu: Add python-cooler., Ricardo Wurmus, 2018/09/05
- [bug#32642] [PATCH 11/16] gnu: Add python-intervaltree., Ricardo Wurmus, 2018/09/05
- [bug#32642] [PATCH 13/16] gnu: Add python-pyfaidx., Ricardo Wurmus, 2018/09/05
- [bug#32642] [PATCH 12/16] gnu: Add python-pypairix., Ricardo Wurmus, 2018/09/05