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[bug#37988] [PATCH 3/6] gnu: Add r-rprotobuflib.
From: |
zimoun |
Subject: |
[bug#37988] [PATCH 3/6] gnu: Add r-rprotobuflib. |
Date: |
Wed, 30 Oct 2019 11:25:28 +0100 |
* gnu/packages/bioconductor.scm (r-rprotobuflib): New variable.
---
gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 92e5d3ec0b..7c1761852c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6166,3 +6166,42 @@ data.")
(synopsis "Visualization for flow cytometry data")
(description "This package provides visualization tools for flow cytometry
data.")
(license license:artistic2.0)))
+
+(define-public r-rprotobuflib
+ (package
+ (name "r-rprotobuflib")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "RProtoBufLib" version))
+ (sha256
+ (base32
+ "1vhwxw7281n5wpg30ik3m1gwarfmj4b8cqxdvj0sck44yx24lphg"))))
+ (properties
+ `((upstream-name . "RProtoBufLib")))
+ (build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; Contains unverified binaries:
+ ;; src/win/lib/{i386,x64}/libprotobuf.a
+ (add-after 'unpack 'remove-win-folder
+ (lambda _
+ (delete-file-recursively "src/win")
+ #t))
+ ;; Fix non-conventional packaging.
+ ;; The dependency to protobuf-2.6.0 is included as tgz and build
+ ;; by the R package itself.
+ (add-after 'unpack 'fix-wrong-hard-coded
+ (lambda _
+ (with-directory-excursion "src"
+ (invoke "tar" "xf" "protobuf-2.6.0.tgz"))
+ (substitute* "src/protobuf-2.6.0/configure"
+ (("#! /bin/sh") (string-append "#!" (which "sh"))))
+ #t)))))
+ (home-page "https://bioconductor.org/packages/RProtoBufLib")
+ (synopsis "C++ headers and static libraries of Protocol buffers")
+ (description "This package provides the headers and static library of
+Protocol buffers 2.6.0 for other R packages to compile and link against.")
+ (license license:bsd-3)))
--
2.23.0