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[bug#55424] [PATCH 026/602] gnu: Remove python2-warpedlmm.
From: |
Maxim Cournoyer |
Subject: |
[bug#55424] [PATCH 026/602] gnu: Remove python2-warpedlmm. |
Date: |
Sun, 15 May 2022 00:36:53 -0400 |
* gnu/packages/bioinformatics.scm (python2-warpedlmm): Delete variable.
---
gnu/packages/bioinformatics.scm | 41 ---------------------------------
1 file changed, 41 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c70b9e3aa7..b0ad03612e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5365,47 +5365,6 @@ (define-public python2-pbcore
files and writing bioinformatics applications.")
(license license:bsd-3)))
-(define-public python2-warpedlmm
- (package
- (name "python2-warpedlmm")
- (version "0.21")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "WarpedLMM" version ".zip"))
- (sha256
- (base32
- "1agfz6zqa8nc6cw47yh0s3y14gkpa9wqazwcj7mwwj3ffnw39p3j"))))
- (build-system python-build-system)
- (arguments
- `(#:python ,python-2 ; requires Python 2.7
- #:tests? #f ; test data are not included
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'use-weave
- (lambda _
- (substitute* "warpedlmm/util/linalg.py"
- (("from scipy import linalg, weave")
- "from scipy import linalg\nimport weave"))
- #t)))))
- (propagated-inputs
- (list python2-scipy
- python2-numpy
- python2-matplotlib
- python2-fastlmm
- python2-pandas
- python2-pysnptools
- python2-weave))
- (native-inputs
- (list python2-mock python2-nose unzip))
- (home-page "https://github.com/PMBio/warpedLMM")
- (synopsis "Implementation of warped linear mixed models")
- (description
- "WarpedLMM is a Python implementation of the warped linear mixed model,
-which automatically learns an optimal warping function (or transformation) for
-the phenotype as it models the data.")
- (license license:asl2.0)))
-
(define-public prank
(package
(name "prank")
--
2.36.0
- [bug#55424] [PATCH 085/602] gnu: pius: Update to 3.0.0., (continued)
- [bug#55424] [PATCH 085/602] gnu: pius: Update to 3.0.0., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 099/602] gnu: Remove mloop., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 101/602] gnu: Remove non-timeline., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 091/602] gnu: Remove key-mon., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 100/602] gnu: Remove gtklick., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 102/602] gnu: Remove non-mixer., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 060/602] gnu: Remove python2-scikit-learn., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 028/602] gnu: Remove python2-screed., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 039/602] gnu: Remove python2-rednose., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 064/602] gnu: Remove python2-statsmodels., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 026/602] gnu: Remove python2-warpedlmm.,
Maxim Cournoyer <=
- [bug#55424] [PATCH 086/602] gnu: Remove python2-pydot., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 097/602] gnu: Remove python2-musicbrainzngs., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 083/602] gnu: Remove python2-gpg., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 031/602] gnu: Remove pyicoteo., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 032/602] gnu: Remove transmission-remote-cli., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 037/602] gnu: Remove python2-pytest-capturelog., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 045/602] gnu: Remove python2-pytest-subtesthack., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 090/602] gnu: Remove python2-iso639., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 079/602] gnu: nototools: Update to 0.2.16., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 056/602] gnu: Remove python2-pyodbc-c., Maxim Cournoyer, 2022/05/15