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[bug#55424] [PATCH 031/602] gnu: Remove pyicoteo.
From: |
Maxim Cournoyer |
Subject: |
[bug#55424] [PATCH 031/602] gnu: Remove pyicoteo. |
Date: |
Sun, 15 May 2022 00:36:58 -0400 |
* gnu/packages/bioinformatics.scm (pyicoteo): Delete variable.
---
gnu/packages/bioinformatics.scm | 39 ---------------------------------
1 file changed, 39 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bda958f6f5..0fd7844a26 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5405,45 +5405,6 @@ (define-public proteinortho
large-scale data and can be applied to hundreds of species at once.")
(license license:gpl3+)))
-(define-public pyicoteo
- (package
- (name "pyicoteo")
- (version "2.0.7")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://bitbucket.org/regulatorygenomicsupf/pyicoteo.git")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0hz5g8d25lbjy1wpscr490l0lmyvaix893hhax4fxnh1h9w34w8p"))))
- (build-system python-build-system)
- (arguments
- `(#:python ,python-2 ; does not work with Python 3
- #:tests? #f)) ; there are no tests
- (inputs
- (list python2-matplotlib))
- (home-page "https://bitbucket.org/regulatorygenomicsupf/pyicoteo")
- (synopsis "Analyze high-throughput genetic sequencing data")
- (description
- "Pyicoteo is a suite of tools for the analysis of high-throughput genetic
-sequencing data. It works with genomic coordinates. There are currently six
-different command-line tools:
-
-@enumerate
-@item pyicoregion: for generating exploratory regions automatically;
-@item pyicoenrich: for differential enrichment between two conditions;
-@item pyicoclip: for calling CLIP-Seq peaks without a control;
-@item pyicos: for genomic coordinates manipulation;
-@item pyicoller: for peak calling on punctuated ChIP-Seq;
-@item pyicount: to count how many reads from N experiment files overlap in a
- region file;
-@item pyicotrocol: to combine operations from pyicoteo.
-@end enumerate\n")
- (license license:gpl3+)))
-
(define-public prodigal
(package
(name "prodigal")
--
2.36.0
- [bug#55424] [PATCH 100/602] gnu: Remove gtklick., (continued)
- [bug#55424] [PATCH 100/602] gnu: Remove gtklick., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 102/602] gnu: Remove non-mixer., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 060/602] gnu: Remove python2-scikit-learn., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 028/602] gnu: Remove python2-screed., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 039/602] gnu: Remove python2-rednose., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 064/602] gnu: Remove python2-statsmodels., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 026/602] gnu: Remove python2-warpedlmm., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 086/602] gnu: Remove python2-pydot., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 097/602] gnu: Remove python2-musicbrainzngs., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 083/602] gnu: Remove python2-gpg., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 031/602] gnu: Remove pyicoteo.,
Maxim Cournoyer <=
- [bug#55424] [PATCH 032/602] gnu: Remove transmission-remote-cli., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 037/602] gnu: Remove python2-pytest-capturelog., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 045/602] gnu: Remove python2-pytest-subtesthack., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 090/602] gnu: Remove python2-iso639., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 079/602] gnu: nototools: Update to 0.2.16., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 056/602] gnu: Remove python2-pyodbc-c., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 025/602] gnu: Remove poretools., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 088/602] gnu: Remove h-client., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 093/602] gnu: Remove python2-pyusb., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 029/602] gnu: Remove python2-pyfaidx., Maxim Cournoyer, 2022/05/15