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[bug#61220] [PATCH 06/10] gnu: Add r-tilingarray.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#61220] [PATCH 06/10] gnu: Add r-tilingarray. |
Date: |
Thu, 2 Feb 2023 03:26:53 +0100 |
* gnu/packages/bioconductor.scm (r-tilingarray): New variable.
---
gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3339c751cb..f692114754 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14960,6 +14960,46 @@ (define-public r-wavcluster
procedures that induce nucleotide substitutions (e.g. BisSeq).")
(license license:gpl2)))
+(define-public r-tilingarray
+ (package
+ (name "r-tilingarray")
+ (version "1.76.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "tilingArray" version))
+ (sha256
+ (base32
+ "19bkgblpkcp3w3sdyn82c37gkz1sv3r4d546zpbnh36q2pi3l4zd"))))
+ (properties `((upstream-name . "tilingArray")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-affy
+ r-biobase
+ r-genefilter
+ r-pixmap
+ r-rcolorbrewer
+ r-strucchange
+ r-vsn))
+ (home-page "https://bioconductor.org/packages/tilingArray")
+ (synopsis "Transcript mapping with high-density oligonucleotide tiling
arrays")
+ (description
+ "The package provides functionality that can be useful for the analysis of
+the high-density tiling microarray data (such as from Affymetrix genechips) or
for
+measuring the transcript abundance and the architecture. The main
functionalities
+of the package are:
+@enumerate
+@item the class segmentation for representing partitionings of a linear series
of
+data;
+@item the function segment for fitting piecewise constant models using a
dynamic
+programming algorithm that is both fast and exact;
+@item the function confint for calculating confidence intervals using the
strucchange
+package;
+@item the function plotAlongChrom for generating pretty plots;
+@item the function normalizeByReference for probe-sequence dependent response
+adjustment from a (set of) reference hybridizations.
+@end enumerate")
+ (license license:artistic2.0)))
+
(define-public r-timeseriesexperiment
(package
(name "r-timeseriesexperiment")
--
2.39.1
- [bug#61220] [patch] gnu: Add r-glad, r-italicsdata, r-pd-mapping50k-xba240, r-italics, r-manor, r-tilingarray, r-snapcgh, r-quantsmooth, r-beadarraysnp and r-adacgh2., address@hidden, 2023/02/01
- [bug#61220] [PATCH 01/10] gnu: Add r-glad., Mădălin Ionel Patrașcu, 2023/02/01
- [bug#61220] [PATCH 03/10] gnu: Add r-pd-mapping50k-xba240., Mădălin Ionel Patrașcu, 2023/02/01
- [bug#61220] [PATCH 07/10] gnu: Add r-snapcgh., Mădălin Ionel Patrașcu, 2023/02/01
- [bug#61220] [PATCH 04/10] gnu: Add r-italics., Mădălin Ionel Patrașcu, 2023/02/01
- [bug#61220] [PATCH 02/10] gnu: Add r-italicsdata., Mădălin Ionel Patrașcu, 2023/02/01
- [bug#61220] [PATCH 09/10] gnu: Add r-beadarraysnp., Mădălin Ionel Patrașcu, 2023/02/01
- [bug#61220] [PATCH 06/10] gnu: Add r-tilingarray.,
Mădălin Ionel Patrașcu <=
- [bug#61220] [PATCH 10/10] gnu: Add r-adacgh2., Mădălin Ionel Patrașcu, 2023/02/01
- [bug#61220] [PATCH 05/10] gnu: Add r-manor., Mădălin Ionel Patrașcu, 2023/02/01
- [bug#61220] [PATCH 08/10] gnu: Add r-quantsmooth., Mădălin Ionel Patrașcu, 2023/02/01
- bug#61220: [PATCH 01/10] gnu: Add r-glad., Ricardo Wurmus, 2023/02/07