Re: [h5md-user] H5MD Mosaic module

[Pierre de Buyl]

On Fri, Jul 11, 2014 at 09:34:57AM +0200, Konrad Hinsen wrote:
> Pierre de Buyl writes:
> 
>  > This is simply great :-) Do you have any sample H5MD/mosaic data?
> 
> Here's a cut-down protein MD simulation:
> 
>   https://filex.cnrs-orleans.fr/get?k=pxXUb0phUPPLprqrwul
> 
> It contains only the C-alpha atoms of the protein, so it's reasonably
> small (16 MB). I still have to run some checks on it, but if it
> passes, this will be my first trajectory to be published (figshare or
> Zenodo) as supplementary material to an upcoming article.

Thanks! I think that it is amazing to see that you could combine in a
constructive way the different HDF5 sub-formats.

> BTW, if any of you have example trajectories of reasonable size, I
> think it would be a good idea to upload them to figshare or Zenodo and
> add the tag "H5MD". Then, add a link pointing to the figshare or
> Zenodo search for the tag. People can then find example trajectories,
> and add their own to the list just by using the tag.
> 
> I have done this for ActivePapers, here are the links to the search
> pages:
> 
>   http://figshare.com/articles/search?q=tag%3A+ActivePapers
>   http://zenodo.org/search?f=keyword&p=%22ActivePapers%22

That's a good idea. I'll try to think of some non totally useless datasets to
put online.

P