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[Espressomd-maintainer] Build failed in Jenkins: master-python-interface
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From: |
Jenkins Demon |
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Subject: |
[Espressomd-maintainer] Build failed in Jenkins: master-python-interface #108 |
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Date: |
Fri, 16 May 2014 19:23:49 +0200 (CEST) |
See <http://espressomd.org/jenkins/job/master-python-interface/108/changes>
Changes:
[Rudolf Weeber] Python: Doc strings and type checking
[Rudolf Weeber] More work on python access to particle properties
[Rudolf Weeber] Python: Better error messages when setting particle properties
[Rudolf Weeber] Python: Made more ifdef-features available in python
[Rudolf Weeber] python: Unit test for setting/getting basic particle properties
[Rudolf Weeber] python: Allow integres as input when setting particle
properties which are of type float
[Rudolf Weeber] python: Particle data structure
[Rudolf Weeber] More particle properties: rotation stuf, mass + unit test
[Rudolf Weeber] Python: Doc strings and type checking
[Rudolf Weeber] More work on python access to particle properties
[Rudolf Weeber] Python: Better error messages when setting particle properties
[Rudolf Weeber] Python: Made more ifdef-features available in python
[Rudolf Weeber] python: Unit test for setting/getting basic particle properties
[Rudolf Weeber] python: Allow integres as input when setting particle
properties which are of type float
[Rudolf Weeber] python: Particle data structure
[Rudolf Weeber] More particle properties: rotation stuf, mass + unit test
[Rudolf Weeber] Python: More particle properties. dipoles, director, virtual,
vs_relative, charge + unit test
[Rudolf Weeber] Python: Handling of particle bonds
[Rudolf Weeber] Remove compile time switches in the bonded_ia_parameters data
structure to avoid complexity in python interface
[Rudolf Weeber] Python: Make the bonded_ia_parameters data structure available
in cython
[Rudolf Weeber] Python: More work on bonded ia
[Rudolf Weeber] Python: Make cuda compile time switch available
[Rudolf Weeber] Split the sub-structs of the typedef of Bonded_ia_params in
preparation for python interface of bonded ia
[Rudolf Weeber] Python: Wrong c imports in lb and cuda
[Rudolf Weeber] Python: More corrected imports from cpp
[Rudolf Weeber] Python: Synchronized bonded ia data structures with cpp
[Rudolf Weeber] Python: fix cuda and lb compilation and initialization
[Rudolf Weeber] Python: Bonded ia incl. testcase
[Rudolf Weeber] Python: Bonded ia fixes + test case
[Rudolf Weeber] Python: Rework non-bonded interactions
[Rudolf Weeber] Python: non-bonded ia, fixes and unit test
[Rudolf Weeber] Python: Interactions fix
[Rudolf Weeber] Revert "Manually build .la-files to avoid the .cpp-files to be
added to the distribution."
[Rudolf Weeber] Python: Updated unit tests
[Rudolf Weeber] Python: Updated nonbonded ia
[Rudolf Weeber] Python: Rename the interaction_data module to interactions
[Rudolf Weeber] Python: Remove broken direct access to lj cap_radius
[Rudolf Weeber] Python: Set/get global forcecap + unit test
[Rudolf Weeber] Python: delete unnecessary file
[Rudolf Weeber] Python: LennardJones interaction - handle shift="auto"
[Rudolf Weeber] Python: Update lj_liquid.py sample script
[Olaf Lenz] Doc.
------------------------------------------
[...truncated 298 lines...]
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/01-lennard_jones/Makefile
config.status: creating doc/tutorials/02-charged_system/Makefile
config.status: creating doc/tutorials/03-object_in_fluid/Makefile
config.status: creating doc/latexit.sh
config.status: creating testsuite/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
****************************************************************
* Configuration summary *
****************************************************************
platform detected = x86_64-unknown-linux-gnu
package version = 3.2.0-897-gdf2a884
development sources = yes
Compiler
--------
compiler = mpic++
linker = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags = -Wall -O5
c++ preprocessor flags =
linker flags = -L/usr/local/cuda/lib64
libraries = -lcufft -lcudart -lfftw3 -lm
using debug flags =
using profiling flags =
Libraries
---------
FFTW = yes
efence = no
Cuda
----
CUDA compiler = /usr/local/cuda/bin/nvcc
CUDA flags = --ptxas-options=-v -gencode
arch=compute_20,code=compute_20
Tcl/Tk
------
Tcl version = none
Tk version = none
Python
------
python = /usr/local/bin/python
build python interface = yes
preprocessor flags =
-I/usr/local/stow/epd-7.3.2/lib/epd-7.3.2/include/python2.7
-I/usr/local/stow/epd-7.3.2/lib/epd-7.3.2/include/python2.7
-fno-strict-aliasing -g -O2 -DNDEBUG -O2
-I/usr/local/stow/epd-7.3.2/lib/epd-7.3.2/lib/python2.7/site-packages/numpy/core/include
linker flags = -lpthread -ldl -lutil -lm -lpython2.7 -Xlinker
-export-dynamic
extra flags = -lpthread -ldl -lutil -lm -lpython2.7
extra linker flags =
Other settings
--------------
config = myconfig.hpp
installation prefix = /home/jenkins/Espresso
number of test tasks = 8
mympiexec =
<http://espressomd.org/jenkins/job/master-python-interface/ws/mympiexec.sh>
mpiexec = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex = /usr/bin/pdflatex
makeindex = /usr/bin/makeindex
bibtex = /usr/bin/bibtex
doxygen = /usr/bin/doxygen
dot = /usr/bin/dot
END CONFIGURE
<http://espressomd.org/jenkins/job/master-python-interface/ws/>
+ maintainer/jenkins/build.sh
srcdir=<http://espressomd.org/jenkins/job/master-python-interface/ws/>
builddir=<http://espressomd.org/jenkins/job/master-python-interface/ws/>
insource=true
START BUILD
myconfig=default
build_procs=1
<http://espressomd.org/jenkins/job/master-python-interface/ws/>
<http://espressomd.org/jenkins/job/master-python-interface/ws/>
Using default myconfig.
>make -j 1
Making all in config
make[1]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/config'>
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/config'>
Making all in src
make[1]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
GEN myconfig-final.hpp <= ./myconfig-default.hpp
GEN config-features.hpp
make all-recursive
make[2]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
Making all in .
make[3]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
CXX config-features.lo
CXX cells.lo
CXX collision.lo
CXX communication.lo
CXX comfixed.lo
CXX comforce.lo
CXX constraint.lo
CXX cuda_interface.lo
CXX debug.lo
CXX domain_decomposition.lo
CXX electrokinetics_pdb_parse.lo
CXX energy.lo
CXX errorhandling.lo
CXX fft.lo
CXX fft-common.lo
CXX fft-dipolar.lo
CXX forcecap.lo
CXX forces.lo
CXX galilei.lo
CXX ghosts.lo
CXX global.lo
CXX grid.lo
CXX halo.lo
CXX iccp3m.lo
CXX imd.lo
CXX initialize.lo
CXX integrate.lo
CXX interaction_data.lo
CXX lattice.lo
CXX layered.lo
CXX lb.lo
CXX lb-boundaries.lo
CXX lbgpu.lo
CXX metadynamics.lo
CXX modes.lo
CXX molforces.lo
CXX mol_cut.lo
CXX nemd.lo
CXX nsquare.lo
CXX particle_data.lo
CXX polymer.lo
CXX pressure.lo
CXX random.lo
CXX rattle.lo
CXX reaction.lo
CXX rotation.lo
CXX specfunc.lo
CXX statistics.lo
CXX statistics_chain.lo
CXX statistics_cluster.lo
CXX statistics_correlation.lo
CXX statistics_fluid.lo
CXX statistics_molecule.lo
CXX statistics_observable.lo
CXX statistics_wallstuff.lo
CXX thermostat.lo
CXX topology.lo
CXX tuning.lo
CXX uwerr.lo
CXX verlet.lo
CXX virtual_sites.lo
CXX virtual_sites_com.lo
CXX virtual_sites_relative.lo
CXX vmdsock.lo
CXX ghmc.lo
CXX EspressoSystemInterface.lo
CXX bmhtf-nacl.lo
CXX buckingham.lo
CXX dpd.lo
CXX gaussian.lo
CXX gb.lo
CXX hat.lo
CXX hertzian.lo
CXX lj.lo
CXX ljangle.lo
CXX ljcos.lo
CXX ljcos2.lo
CXX ljgen.lo
CXX morse.lo
CXX soft_sphere.lo
CXX steppot.lo
CXX tab.lo
CXX tunable_slip.lo
CXX angle.lo
CXX angle_harmonic.lo
CXX angle_cosine.lo
CXX angle_cossquare.lo
CXX angledist.lo
CXX dihedral.lo
CXX endangledist.lo
CXX fene.lo
CXX harmonic.lo
CXX overlap.lo
CXX subt_lj.lo
CXX object-in-fluid/area_force_local.lo
CXX object-in-fluid/area_force_global.lo
CXX object-in-fluid/bending_force.lo
CXX object-in-fluid/stretching_force.lo
CXX object-in-fluid/stretchlin_force.lo
CXX object-in-fluid/volume_force.lo
CXX debye_hueckel.lo
CXX elc.lo
CXX magnetic_non_p3m_methods.lo
CXX mdlc_correction.lo
CXX maggs.lo
CXX mmm1d.lo
CXX mmm2d.lo
CXX mmm-common.lo
CXX p3m.lo
CXX p3m-common.lo
CXX p3m-dipolar.lo
CXX reaction_field.lo
NVCC cuda_init_cuda.lo
NVCC cuda_common_cuda.lo
NVCC electrokinetics_cuda.lo
NVCC lbgpu_cuda.lo
NVCC p3m_gpu_cuda.lo
NVCC EspressoSystemInterface_cuda.lo
NVCC HarmonicForce.lo
GEN config-version.cpp
CXX config-version.lo
CXXLD libEspresso.la
make[3]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
Making all in python
make[3]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python'>
Making all in espresso
make[4]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espresso'>
GEN gen_pxiconfig.cpp
Reading definitions from ../../../src/features.def...
Done.
Writing gen_pxiconfig.cpp...
Done.
CXX gen_pxiconfig.o
CXXLD gen_pxiconfig
GEN myconfig.pxi
make all-am
make[5]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espresso'>
GEN python-all
CYTHON System.cpp
CXXLD System.la
libtool: link: `System.lo' is not a valid libtool object
make[5]: *** [System.la] Error 1
make[5]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espresso'>
make[4]: *** [all] Error 2
make[4]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espresso'>
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python'>
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
make[1]: *** [all] Error 2
make[1]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts
- [Espressomd-maintainer] Build failed in Jenkins: master-python-interface #108,
Jenkins Demon <=