[Espressomd-maintainer] Build failed in Jenkins: master-build-check #162

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-build-check/162/changes>

Changes:

[Florian Weik] extended lattic struct for anisotropy.

[Florian Weik] extended lattice!

[Florian Weik] ...

[Florian Weik] ...

[Stefan Kesselheim] new code for the lattice and the potential!

[Stefan Kesselheim] added new slitpore constraint

[Stefan Kesselheim] minor improvments to different dielectric things

[Stefan Kesselheim] minor improvments to different dielectric things

[Stefan Kesselheim] fixed small error

[Stefan Kesselheim] added iccp3m subcommand no_iterations

[Stefan Kesselheim] added a parameter to the dielectric pore

[Stefan Kesselheim] fixed bug in iccp3m

[Stefan Kesselheim] changed the structure of observables

[Stefan Kesselheim] fixed missing memory allocation

[Stefan Kesselheim] added documentation and other stuff

[Stefan Kesselheim] mostly complete implementation of the ext. tab. field

[Stefan Kesselheim] little fix in dielectrics

[Stefan Kesselheim] added observable autoupdate feature

[Stefan Kesselheim] added energy calculation for external potentials

[Stefan Kesselheim] small fixes to external potential

[Stefan Kesselheim] small fixes to external potential

[Stefan Kesselheim] added testcase for external potential

[Stefan Kesselheim] small fix in memory management

[Stefan Kesselheim] small correction so that LB works with the lattice 
implementation

[Stefan Kesselheim] small fix to iccp3m and pore dielectric

[Stefan Kesselheim] parallelized observable_lb_radial_velocity_profile

[Stefan Kesselheim] added charge density argument for dielectric pore

[Stefan Kesselheim] added missing charge density broadcast to iccp3m

[Stefan Kesselheim] separated fluid interpolation from force calculation

[Stefan Kesselheim] ported lb_radial_velocity_profile to gpu

[Stefan Kesselheim] added out radius for pore constraint an lbboundary

[Stefan Kesselheim] added force to velocity interpolation in lbgpu

[Stefan Kesselheim] added guards for lb_radial_profile

[Stefan Kesselheim] fixed bug regarding outer radius of pore

[Stefan Kesselheim] fixed bug in iccp3m

[Stefan Kesselheim] added NEWS for slitpore constraint and pore constraint

[Stefan Kesselheim] still merging supercaps and c++ master

[Stefan Kesselheim] added lost part of dielectric slitpore implementation

[Stefan Kesselheim] fixing errors resulting from the merge

[Stefan Kesselheim] added lost source file

[Stefan Kesselheim] fixed bug in iccp3m. Again.

[Stefan Kesselheim] wrote c++ version of normal parsers for iccp3m.

[Stefan Kesselheim] fixed little error in include

[Stefan Kesselheim] added tk8.6 support

[Stefan Kesselheim] fixed includes for tk.h

[Stefan Kesselheim] fixed iccp3m normals parser (with c++)

[Stefan Kesselheim] generic appending of complex datatypes to TCL result

[Stefan Kesselheim] small fix to external potential

[Stefan Kesselheim] small fixes to the generic Tcl_Append

[Stefan Kesselheim] moved the Tcl_Append functions to a file with a better name

[Stefan Kesselheim] added slitpore constraint and dielectric documentation

[Stefan Kesselheim] small fix to lattice and external potential

[Stefan Kesselheim] allowed for use of interdpd _with_ other thermostats

[Stefan Kesselheim] small fixes to correlation and observable

[Stefan Kesselheim] changed to displacement-based radial flux profile

[Stefan Kesselheim] added missing iccp3m sigma broadcast

[Stefan Kesselheim] added a flag to disable DPD being switched off for fixed 
particles

[Stefan Kesselheim] added news

------------------------------------------
[...truncated 224 lines...]
checking for rint... yes
checking for select... yes
checking for socket... yes
checking for sqrt... yes
****************************************************************
*         Checking for required tools and libraries            *
****************************************************************
checking for libtcl8.6... no
checking for libtcl8.5... yes
checking for tcl.h... yes
checking whether to use FFTW... yes
checking for library containing fftw_plan_many_dft... -lfftw3
checking fftw3.h usability... yes
checking fftw3.h presence... yes
checking for fftw3.h... yes
checking whether to use CUDA... yes
checking for nvcc... /usr/local/cuda/bin/nvcc
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... no
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... (cached) no
checking whether the /usr/local/cuda/bin/nvcc linker 
(/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking for libcudart... yes
checking for libcufft... yes
checking whether CUDA compiles... yes
checking whether CUDA runs... yes
****************************************************************
*                  Checking for Python                         *
****************************************************************
checking for a Python interpreter with version >= 2.5... python
checking for python... /usr/local/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/site-packages
checking for python extension module directory... 
${exec_prefix}/lib/python2.7/site-packages
checking whether python -B works... yes
checking whether to build the python interface... no
****************************************************************
*                  Checking for Tcl/Tk                         *
****************************************************************
checking whether to build the Tcl interface... yes
checking for libtcl8.6... no
checking for tcl.h... yes
checking whether to use Tk... yes
****************************************************************
*                   Other settings                             *
****************************************************************
checking whether to use efence... no
checking whether the variable MYCONFIG is set... no
checking the number of available CPUs... 8 
****************************************************************
*                   Creating output files                      *
****************************************************************
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config/Makefile
config.status: creating config/myconfig-sample-header.hpp
config.status: creating src/Makefile
config.status: creating src/tcl/Makefile
config.status: creating src/python/Makefile
config.status: creating src/python/espresso/Makefile
config.status: creating tools/Makefile
config.status: creating scripts/Makefile
config.status: creating testsuite/Makefile
config.status: creating doc/Makefile
config.status: creating doc/logo/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/01-lennard_jones/Makefile
config.status: creating doc/tutorials/02-charged_system/Makefile
config.status: creating doc/tutorials/03-object_in_fluid/Makefile
config.status: creating doc/latexit.sh
config.status: creating testsuite/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
****************************************************************
*                   Configuration summary                      *
****************************************************************
platform detected       = x86_64-unknown-linux-gnu
package version         = 3.2.0-973-ga85f205
development sources     = yes

Compiler
--------
compiler                = mpic++
linker                  = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags      = -Wall -O5 
c++ preprocessor flags  = 
linker flags            =  -L/usr/local/cuda/lib64
libraries               = -lcufft -lcudart -lfftw3 -ltcl8.5  -lm
using debug flags       = 
using profiling flags   = 

Libraries
---------
FFTW                    = yes
efence                  = no

Cuda
----
CUDA compiler           = /usr/local/cuda/bin/nvcc
CUDA flags              =  --ptxas-options=-v -gencode 
arch=compute_20,code=compute_20

Tcl/Tk
------
Tcl version             = tcl8.5
Tk version              = none

Python
------
python                  = /usr/local/bin/python -B
build python interface  = no

Other settings
--------------
config                  = myconfig.hpp
installation prefix     = /home/jenkins/Espresso
number of test tasks    = 8
mympiexec               = 
<http://espressomd.org/jenkins/job/master-build-check/ws/mympiexec.sh>
mpiexec                 = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex                = /usr/bin/pdflatex
makeindex               = /usr/bin/makeindex
bibtex                  = /usr/bin/bibtex
doxygen                 = /usr/bin/doxygen
dot                     = /usr/bin/dot

Not building Python interface.
END CONFIGURE
<http://espressomd.org/jenkins/job/master-build-check/ws/>
+ maintainer/jenkins/build.sh
  srcdir=<http://espressomd.org/jenkins/job/master-build-check/ws/>
  builddir=<http://espressomd.org/jenkins/job/master-build-check/ws/>
  insource=true
START BUILD
  myconfig=maxset
  build_procs=1
<http://espressomd.org/jenkins/job/master-build-check/ws/> 
<http://espressomd.org/jenkins/job/master-build-check/ws/>
Copying maxset.hpp to 
<http://espressomd.org/jenkins/job/master-build-check/ws/myconfig.hpp...>
>make -j 1
Making all in config
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/master-build-check/ws/config'>
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-build-check/ws/config'>
Making all in src
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/master-build-check/ws/src'>
  GEN      myconfig-final.hpp <= ../myconfig.hpp
  GEN      config-features.hpp
make  all-recursive
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/master-build-check/ws/src'>
Making all in .
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-build-check/ws/src'>
  CXX      config-features.lo
  CXX      cells.lo
  CXX      collision.lo
  CXX      communication.lo
communication.cpp: In function 'void mpi_external_potential_broadcast(int)':
communication.cpp:2929:31: warning: unused variable 'e' [-Wunused-variable]
  CXX      comfixed.lo
  CXX      comforce.lo
  CXX      constraint.lo
  CXX      cuda_interface.lo
  CXX      debug.lo
  CXX      domain_decomposition.lo
  CXX      electrokinetics_pdb_parse.lo
  CXX      energy.lo
  CXX      external_potential.lo
external_potential.cpp: In function 'int lattice_read_file(Lattice*, char*)':
external_potential.cpp:176:46: warning: deprecated conversion from string 
constant to 'char*' [-Wwrite-strings]
  CXX      errorhandling.lo
  CXX      fft.lo
  CXX      fft-common.lo
  CXX      fft-dipolar.lo
  CXX      forcecap.lo
  CXX      forces.lo
  CXX      galilei.lo
  CXX      ghosts.lo
  CXX      global.lo
  CXX      grid.lo
  CXX      halo.lo
  CXX      iccp3m.lo
  CXX      imd.lo
  CXX      initialize.lo
  CXX      integrate.lo
  CXX      interaction_data.lo
  CXX      lattice.lo
lattice.cpp: In function 'void lattice_interpolate_linear_gradient(Lattice*, 
double*, double*)':
lattice.cpp:151:33: warning: comparison between signed and unsigned integer 
expressions [-Wsign-compare]
lattice.cpp:156:31: warning: comparison between signed and unsigned integer 
expressions [-Wsign-compare]
lattice.cpp:163:31: warning: comparison between signed and unsigned integer 
expressions [-Wsign-compare]
lattice.cpp:170:31: warning: comparison between signed and unsigned integer 
expressions [-Wsign-compare]
lattice.cpp:177:31: warning: comparison between signed and unsigned integer 
expressions [-Wsign-compare]
lattice.cpp:184:31: warning: comparison between signed and unsigned integer 
expressions [-Wsign-compare]
lattice.cpp:191:31: warning: comparison between signed and unsigned integer 
expressions [-Wsign-compare]
lattice.cpp:198:31: warning: comparison between signed and unsigned integer 
expressions [-Wsign-compare]
lattice.cpp:205:31: warning: comparison between signed and unsigned integer 
expressions [-Wsign-compare]
lattice.cpp:145:11: warning: unused variable 'w' [-Wunused-variable]
lattice.cpp:145:17: warning: unused variable 'wd' [-Wunused-variable]
lattice.cpp:146:12: warning: unused variable 'temp_index' [-Wunused-variable]
lattice.cpp: In function 'void lattice_interpolate_linear(Lattice*, double*, 
double*)':
lattice.cpp:253:31: warning: comparison between signed and unsigned integer 
expressions [-Wsign-compare]
lattice.cpp:260:33: warning: comparison between signed and unsigned integer 
expressions [-Wsign-compare]
lattice.cpp:234:12: warning: unused variable 'temp_index' [-Wunused-variable]
  CXX      layered.lo
  CXX      lb.lo
lb.cpp: In function 'int lb_lbfluid_print_vtk_boundary(char*)':
lb.cpp:598:271: error: invalid operands of types 'double [3]' and 'double' to 
binary 'operator*'
lb.cpp:598:292: error: invalid operands of types 'double [3]' and 'double' to 
binary 'operator*'
lb.cpp:598:313: error: invalid operands of types 'double [3]' and 'double' to 
binary 'operator*'
lb.cpp: In function 'int lb_lbfluid_print_vtk_velocity(char*)':
lb.cpp:687:271: error: invalid operands of types 'double [3]' and 'double' to 
binary 'operator*'
lb.cpp:687:292: error: invalid operands of types 'double [3]' and 'double' to 
binary 'operator*'
lb.cpp:687:313: error: invalid operands of types 'double [3]' and 'double' to 
binary 'operator*'
lb.cpp: In function 'int lb_lbfluid_print_boundary(char*)':
lb.cpp:734:40: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator/'
lb.cpp:735:40: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator/'
lb.cpp:736:40: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator/'
lb.cpp:743:63: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator*'
lb.cpp:743:93: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator*'
lb.cpp:743:123: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator*'
lb.cpp: In function 'int lb_lbfluid_print_velocity(char*)':
lb.cpp:786:40: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator/'
lb.cpp:787:40: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator/'
lb.cpp:788:40: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator/'
lb.cpp:798:69: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator*'
lb.cpp:798:99: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator*'
lb.cpp:798:129: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator*'
lb.cpp: In function 'void calc_particle_lattice_ia()':
lb.cpp:2997:53: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator*'
lb.cpp:2997:102: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator*'
lb.cpp:2998:56: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator*'
lb.cpp:2998:105: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator*'
lb.cpp:2999:56: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator*'
lb.cpp:2999:105: error: invalid operands of types 'double' and 'double [3]' to 
binary 'operator*'
make[3]: *** [lb.lo] Error 1
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-build-check/ws/src'>
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-build-check/ws/src'>
make[1]: *** [all] Error 2
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-build-check/ws/src'>
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts