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[Espressomd-maintainer] Build failed in Jenkins: master-python-interface
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From: |
Jenkins Demon |
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Subject: |
[Espressomd-maintainer] Build failed in Jenkins: master-python-interface #109 |
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Date: |
Fri, 16 May 2014 19:29:02 +0200 (CEST) |
See <http://espressomd.org/jenkins/job/master-python-interface/109/changes>
Changes:
[Florian Weik] extended lattic struct for anisotropy.
[Florian Weik] extended lattice!
[Florian Weik] ...
[Florian Weik] ...
[Stefan Kesselheim] new code for the lattice and the potential!
[Stefan Kesselheim] added new slitpore constraint
[Stefan Kesselheim] minor improvments to different dielectric things
[Stefan Kesselheim] minor improvments to different dielectric things
[Stefan Kesselheim] fixed small error
[Stefan Kesselheim] added iccp3m subcommand no_iterations
[Stefan Kesselheim] added a parameter to the dielectric pore
[Stefan Kesselheim] fixed bug in iccp3m
[Stefan Kesselheim] changed the structure of observables
[Stefan Kesselheim] fixed missing memory allocation
[Stefan Kesselheim] added documentation and other stuff
[Stefan Kesselheim] mostly complete implementation of the ext. tab. field
[Stefan Kesselheim] little fix in dielectrics
[Stefan Kesselheim] added observable autoupdate feature
[Stefan Kesselheim] added energy calculation for external potentials
[Stefan Kesselheim] small fixes to external potential
[Stefan Kesselheim] small fixes to external potential
[Stefan Kesselheim] added testcase for external potential
[Stefan Kesselheim] small fix in memory management
[Stefan Kesselheim] small correction so that LB works with the lattice
implementation
[Stefan Kesselheim] small fix to iccp3m and pore dielectric
[Stefan Kesselheim] parallelized observable_lb_radial_velocity_profile
[Stefan Kesselheim] added charge density argument for dielectric pore
[Stefan Kesselheim] added missing charge density broadcast to iccp3m
[Stefan Kesselheim] separated fluid interpolation from force calculation
[Stefan Kesselheim] ported lb_radial_velocity_profile to gpu
[Stefan Kesselheim] added out radius for pore constraint an lbboundary
[Stefan Kesselheim] added force to velocity interpolation in lbgpu
[Stefan Kesselheim] added guards for lb_radial_profile
[Stefan Kesselheim] fixed bug regarding outer radius of pore
[Stefan Kesselheim] fixed bug in iccp3m
[Stefan Kesselheim] added NEWS for slitpore constraint and pore constraint
[Stefan Kesselheim] still merging supercaps and c++ master
[Stefan Kesselheim] added lost part of dielectric slitpore implementation
[Stefan Kesselheim] fixing errors resulting from the merge
[Stefan Kesselheim] added lost source file
[Stefan Kesselheim] fixed bug in iccp3m. Again.
[Stefan Kesselheim] wrote c++ version of normal parsers for iccp3m.
[Stefan Kesselheim] fixed little error in include
[Stefan Kesselheim] added tk8.6 support
[Stefan Kesselheim] fixed includes for tk.h
[Stefan Kesselheim] fixed iccp3m normals parser (with c++)
[Stefan Kesselheim] generic appending of complex datatypes to TCL result
[Stefan Kesselheim] small fix to external potential
[Stefan Kesselheim] small fixes to the generic Tcl_Append
[Stefan Kesselheim] moved the Tcl_Append functions to a file with a better name
[Stefan Kesselheim] added slitpore constraint and dielectric documentation
[Stefan Kesselheim] small fix to lattice and external potential
[Stefan Kesselheim] allowed for use of interdpd _with_ other thermostats
[Stefan Kesselheim] small fixes to correlation and observable
[Stefan Kesselheim] changed to displacement-based radial flux profile
[Stefan Kesselheim] added missing iccp3m sigma broadcast
[Stefan Kesselheim] added a flag to disable DPD being switched off for fixed
particles
[Stefan Kesselheim] added news
------------------------------------------
[...truncated 343 lines...]
----
CUDA compiler = /usr/local/cuda/bin/nvcc
CUDA flags = --ptxas-options=-v -gencode
arch=compute_20,code=compute_20
Tcl/Tk
------
Tcl version = none
Tk version = none
Python
------
python = /usr/local/bin/python
build python interface = yes
preprocessor flags =
-I/usr/local/stow/epd-7.3.2/lib/epd-7.3.2/include/python2.7
-I/usr/local/stow/epd-7.3.2/lib/epd-7.3.2/include/python2.7
-fno-strict-aliasing -g -O2 -DNDEBUG -O2
-I/usr/local/stow/epd-7.3.2/lib/epd-7.3.2/lib/python2.7/site-packages/numpy/core/include
linker flags = -lpthread -ldl -lutil -lm -lpython2.7 -Xlinker
-export-dynamic
extra flags = -lpthread -ldl -lutil -lm -lpython2.7
extra linker flags =
Other settings
--------------
config = myconfig.hpp
installation prefix = /home/jenkins/Espresso
number of test tasks = 8
mympiexec =
<http://espressomd.org/jenkins/job/master-python-interface/ws/mympiexec.sh>
mpiexec = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex = /usr/bin/pdflatex
makeindex = /usr/bin/makeindex
bibtex = /usr/bin/bibtex
doxygen = /usr/bin/doxygen
dot = /usr/bin/dot
END CONFIGURE
<http://espressomd.org/jenkins/job/master-python-interface/ws/>
+ maintainer/jenkins/build.sh
srcdir=<http://espressomd.org/jenkins/job/master-python-interface/ws/>
builddir=<http://espressomd.org/jenkins/job/master-python-interface/ws/>
insource=true
START BUILD
myconfig=default
build_procs=1
<http://espressomd.org/jenkins/job/master-python-interface/ws/>
<http://espressomd.org/jenkins/job/master-python-interface/ws/>
Using default myconfig.
>make -j 1
Making all in config
make[1]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/config'>
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/config'>
Making all in src
make[1]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
GEN myconfig-final.hpp <= ./myconfig-default.hpp
GEN config-features.hpp
make all-recursive
make[2]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
Making all in .
make[3]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
CXX config-features.lo
CXX cells.lo
CXX collision.lo
CXX communication.lo
communication.cpp: In function 'void mpi_external_potential_broadcast(int)':
communication.cpp:2929:31: warning: unused variable 'e' [-Wunused-variable]
CXX comfixed.lo
CXX comforce.lo
CXX constraint.lo
CXX cuda_interface.lo
CXX debug.lo
CXX domain_decomposition.lo
CXX electrokinetics_pdb_parse.lo
CXX energy.lo
CXX external_potential.lo
external_potential.cpp: In function 'int lattice_read_file(Lattice*, char*)':
external_potential.cpp:176:46: warning: deprecated conversion from string
constant to 'char*' [-Wwrite-strings]
CXX errorhandling.lo
CXX fft.lo
CXX fft-common.lo
CXX fft-dipolar.lo
CXX forcecap.lo
CXX forces.lo
CXX galilei.lo
CXX ghosts.lo
CXX global.lo
CXX grid.lo
CXX halo.lo
CXX iccp3m.lo
CXX imd.lo
CXX initialize.lo
CXX integrate.lo
CXX interaction_data.lo
CXX lattice.lo
lattice.cpp: In function 'void lattice_interpolate_linear_gradient(Lattice*,
double*, double*)':
lattice.cpp:151:33: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:156:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:163:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:170:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:177:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:184:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:191:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:198:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:205:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:145:11: warning: unused variable 'w' [-Wunused-variable]
lattice.cpp:145:17: warning: unused variable 'wd' [-Wunused-variable]
lattice.cpp:146:12: warning: unused variable 'temp_index' [-Wunused-variable]
lattice.cpp: In function 'void lattice_interpolate_linear(Lattice*, double*,
double*)':
lattice.cpp:253:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:260:33: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:234:12: warning: unused variable 'temp_index' [-Wunused-variable]
CXX layered.lo
CXX lb.lo
CXX lb-boundaries.lo
CXX lbgpu.lo
CXX metadynamics.lo
CXX modes.lo
CXX molforces.lo
CXX mol_cut.lo
CXX nemd.lo
CXX nsquare.lo
CXX particle_data.lo
CXX polymer.lo
CXX pressure.lo
CXX random.lo
CXX rattle.lo
CXX reaction.lo
CXX rotation.lo
CXX specfunc.lo
CXX statistics.lo
CXX statistics_chain.lo
CXX statistics_cluster.lo
CXX statistics_correlation.lo
CXX statistics_fluid.lo
CXX statistics_molecule.lo
CXX statistics_observable.lo
statistics_observable.cpp: In function 'int
observable_calc_radial_density_profile(observable*)':
statistics_observable.cpp:629:25: warning: comparison between signed and
unsigned integer expressions [-Wsign-compare]
statistics_observable.cpp: In function 'int
observable_calc_radial_flux_density_profile(observable*)':
statistics_observable.cpp:681:25: warning: comparison between signed and
unsigned integer expressions [-Wsign-compare]
statistics_observable.cpp: In function 'int
observable_calc_flux_density_profile(observable*)':
statistics_observable.cpp:763:25: warning: comparison between signed and
unsigned integer expressions [-Wsign-compare]
statistics_observable.cpp: In function 'int
observable_calc_particle_positions(observable*)':
statistics_observable.cpp:799:16: warning: unused variable 'i'
[-Wunused-variable]
statistics_observable.cpp: In function 'int
observable_calc_particle_forces(observable*)':
statistics_observable.cpp:819:16: warning: unused variable 'i'
[-Wunused-variable]
statistics_observable.cpp: In function 'int
observable_reset_average(observable*)':
statistics_observable.cpp:883:9: warning: unused variable 'error'
[-Wunused-variable]
statistics_observable.cpp: In function 'int observable_calculate(observable*)':
statistics_observable.cpp:41:10: warning: 'temp' may be used uninitialized in
this function [-Wmaybe-uninitialized]
statistics_observable.cpp: In function 'int observable_update(observable*)':
statistics_observable.cpp:49:10: warning: 'temp' may be used uninitialized in
this function [-Wmaybe-uninitialized]
CXX statistics_wallstuff.lo
CXX thermostat.lo
CXX topology.lo
CXX tuning.lo
CXX uwerr.lo
CXX verlet.lo
CXX virtual_sites.lo
CXX virtual_sites_com.lo
CXX virtual_sites_relative.lo
CXX vmdsock.lo
CXX ghmc.lo
CXX EspressoSystemInterface.lo
CXX bmhtf-nacl.lo
CXX buckingham.lo
CXX dpd.lo
CXX gaussian.lo
CXX gb.lo
CXX hat.lo
CXX hertzian.lo
CXX lj.lo
CXX ljangle.lo
CXX ljcos.lo
CXX ljcos2.lo
CXX ljgen.lo
CXX morse.lo
CXX soft_sphere.lo
CXX steppot.lo
CXX tab.lo
CXX tunable_slip.lo
CXX angle.lo
CXX angle_harmonic.lo
CXX angle_cosine.lo
CXX angle_cossquare.lo
CXX angledist.lo
CXX dihedral.lo
CXX endangledist.lo
CXX fene.lo
CXX harmonic.lo
CXX overlap.lo
CXX subt_lj.lo
CXX object-in-fluid/area_force_local.lo
CXX object-in-fluid/area_force_global.lo
CXX object-in-fluid/bending_force.lo
CXX object-in-fluid/stretching_force.lo
CXX object-in-fluid/stretchlin_force.lo
CXX object-in-fluid/volume_force.lo
CXX debye_hueckel.lo
CXX elc.lo
CXX magnetic_non_p3m_methods.lo
CXX mdlc_correction.lo
CXX maggs.lo
CXX mmm1d.lo
CXX mmm2d.lo
CXX mmm-common.lo
CXX p3m.lo
CXX p3m-common.lo
CXX p3m-dipolar.lo
CXX reaction_field.lo
NVCC cuda_init_cuda.lo
NVCC cuda_common_cuda.lo
NVCC electrokinetics_cuda.lo
NVCC lbgpu_cuda.lo
NVCC p3m_gpu_cuda.lo
NVCC EspressoSystemInterface_cuda.lo
NVCC HarmonicForce.lo
GEN config-version.cpp
CXX config-version.lo
CXXLD libEspresso.la
make[3]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
Making all in python
make[3]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python'>
Making all in espresso
make[4]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espresso'>
GEN gen_pxiconfig.cpp
Reading definitions from ../../../src/features.def...
Done.
Writing gen_pxiconfig.cpp...
Done.
CXX gen_pxiconfig.o
CXXLD gen_pxiconfig
GEN myconfig.pxi
make all-am
make[5]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espresso'>
GEN python-all
CYTHON System.cpp
CXXLD System.la
libtool: link: `System.lo' is not a valid libtool object
make[5]: *** [System.la] Error 1
make[5]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espresso'>
make[4]: *** [all] Error 2
make[4]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espresso'>
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python'>
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
make[1]: *** [all] Error 2
make[1]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts