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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-mpich #3


From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mpich #349
Date: Thu, 23 Jun 2016 12:21:03 +0200 (CEST)

See <http://espressomd.org/jenkins/job/master-nightly-mpich/349/changes>

Changes:

[phy79182] redesigned exclusions and added slice input

------------------------------------------
[...truncated 506 lines...]
[ 74%] Built target diamond
[ 75%] Generating actors.cpp
[ 75%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/constraint_tcl.cpp.o
Scanning dependencies of target actors
[ 75%] Building CXX object 
src/python/espressomd/CMakeFiles/actors.dir/actors.cpp.o
[ 75%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/iccp3m_tcl.cpp.o
[ 76%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/forcecap_tcl.cpp.o
[ 76%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/ljgen_tcl.cpp.o
[ 76%] Linking CXX shared library actors.so
[ 76%] Built target actors
[ 77%] Generating analyze.cpp
warning: analyze.pyx:858:76: Unreachable code
[ 77%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/parser.cpp.o
[ 77%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/statistics_wallstuff_tcl.cpp.o
Scanning dependencies of target analyze
[ 77%] Building CXX object 
src/python/espressomd/CMakeFiles/analyze.dir/analyze.cpp.o
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src/python/espressomd/analyze.cpp>:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
 warning: #warning "Using deprecated NumPy API, disable it by " "#defining 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
[ 77%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/hertzian_tcl.cpp.o
[ 78%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/external_potential_tcl.cpp.o
[ 78%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/actor/DipolarDirectSum_tcl.cpp.o
[ 78%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/actor/Ewaldgpu_tcl.cpp.o
[ 78%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/actor/Mmm1dgpu_tcl.cpp.o
[ 79%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/actor/HarmonicOrientationWell_tcl.cpp.o
[ 79%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/actor/HarmonicWell_tcl.cpp.o
[ 79%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/bin_tcl.cpp.o
[ 79%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/comfixed_tcl.cpp.o
[ 79%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/thermostat_tcl.cpp.o
[ 80%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/cells_tcl.cpp.o
[ 80%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/object-in-fluid/out_direction_tcl.cpp.o
[ 80%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/object-in-fluid/affinity_tcl.cpp.o
[ 80%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/object-in-fluid/oif_global_forces_tcl.cpp.o
[ 81%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/object-in-fluid/membrane_collision_tcl.cpp.o
[ 81%] Linking CXX shared library analyze.so
[ 81%] Built target analyze
[ 81%] Generating thermostat.cpp
[ 81%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/object-in-fluid/oif_local_forces_tcl.cpp.o
[ 81%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/harmonic_dumbbell_tcl.cpp.o
Scanning dependencies of target thermostat
[ 81%] Building CXX object 
src/python/espressomd/CMakeFiles/thermostat.dir/thermostat.cpp.o
[ 81%] Generating electrokinetics.cpp
Scanning dependencies of target electrokinetics
[ 81%] Building CXX object 
src/python/espressomd/CMakeFiles/electrokinetics.dir/electrokinetics.cpp.o
[ 81%] Linking CXX shared library electrokinetics.so
[ 82%] Built target electrokinetics
[ 82%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/angle_cosine_tcl.cpp.o
[ 82%] Generating cuda_init.cpp
Scanning dependencies of target cuda_init
[ 82%] Building CXX object 
src/python/espressomd/CMakeFiles/cuda_init.dir/cuda_init.cpp.o
[ 82%] Linking CXX shared library thermostat.so
[ 82%] Linking CXX shared library cuda_init.so
[ 84%] Built target thermostat
[ 84%] Generating integrate.cpp
[ 85%] Built target cuda_init
[ 85%] Generating _init.cpp
[ 85%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/p3m_tcl.cpp.o
Scanning dependencies of target _init
[ 85%] Building CXX object 
src/python/espressomd/CMakeFiles/_init.dir/_init.cpp.o
Scanning dependencies of target integrate
[ 85%] Building CXX object 
src/python/espressomd/CMakeFiles/integrate.dir/integrate.cpp.o
[ 86%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/mol_cut_tcl.cpp.o
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src/python/espressomd/integrate.cpp>:261:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
 warning: #warning "Using deprecated NumPy API, disable it by " "#defining 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
[ 86%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/mmm1d_tcl.cpp.o
[ 86%] Linking CXX shared library integrate.so
[ 87%] Built target integrate
[ 87%] Generating polymer.cpp
[ 88%] Linking CXX shared library _init.so
[ 88%] Built target _init
[ 88%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/maggs_tcl.cpp.o
Scanning dependencies of target polymer
[ 88%] Building CXX object 
src/python/espressomd/CMakeFiles/polymer.dir/polymer.cpp.o
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src/python/espressomd/polymer.cpp>:252:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
 warning: #warning "Using deprecated NumPy API, disable it by " "#defining 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
[ 88%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/overlap_tcl.cpp.o
[ 89%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/magnetic_non_p3m_methods_tcl.cpp.o
[ 89%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/readpdb_tcl.cpp.o
[ 89%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/hydrogen_bond_tcl.cpp.o
[ 89%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/nemd_tcl.cpp.o
[ 89%] Linking CXX shared library h5md.so
[ 89%] Linking CXX shared library polymer.so
[ 89%] Built target h5md
[ 89%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/ljcos2_tcl.cpp.o
[ 89%] Built target polymer
Scanning dependencies of target espressomd
[ 89%] Built target espressomd
Scanning dependencies of target pypresso
[ 89%] Built target pypresso
[ 90%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/gaussian_tcl.cpp.o
[ 90%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/energy_tcl.cpp.o
[ 90%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/morse_tcl.cpp.o
[ 90%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/uwerr_tcl.cpp.o
[ 91%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/reaction_tcl.cpp.o
[ 91%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/elc_tcl.cpp.o
[ 91%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/cuda_init_tcl.cpp.o
[ 91%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/reaction_field_tcl.cpp.o
[ 91%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/ghmc_tcl.cpp.o
[ 92%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/buckingham_tcl.cpp.o
[ 92%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/comforce_tcl.cpp.o
[ 92%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/galilei_tcl.cpp.o
[ 92%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/cos2_tcl.cpp.o
[ 93%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/p3m-dipolar_tcl.cpp.o
[ 93%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/statistics_correlation_tcl.cpp.o
[ 93%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/lb-boundaries_tcl.cpp.o
[ 93%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/bonded_coulomb_tcl.cpp.o
[ 93%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/soft_sphere_tcl.cpp.o
[ 94%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/rattle_tcl.cpp.o
[ 94%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/debye_hueckel_tcl.cpp.o
[ 94%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/particle_data_tcl.cpp.o
[ 94%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/bmhtf-nacl_tcl.cpp.o
[ 95%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/binary_file_tcl.cpp.o
[ 95%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/ljangle_tcl.cpp.o
[ 95%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/config_tcl.cpp.o
[ 95%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/collision_tcl.cpp.o
[ 96%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/initialize_interpreter.cpp.o
[ 96%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/umbrella_tcl.cpp.o
[ 96%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/topology_tcl.cpp.o
[ 96%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/main.cpp.o
[ 96%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/twist_stack_tcl.cpp.o
[ 97%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/integrate_tcl.cpp.o
[ 97%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/scriptsdir.cpp.o
[ 97%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/channels_tcl.cpp.o
[ 97%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/statistics_observable_tcl.cpp.o
[ 98%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/pressure_tcl.cpp.o
[ 98%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/gb_tcl.cpp.o
[ 98%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/global_tcl.cpp.o
[ 98%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/tuning_tcl.cpp.o
[ 98%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/statistics_tcl.cpp.o
[100%] Linking CXX executable ../../Espresso
[100%] Built target Espresso
+ make check
-- Config file: 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src/core/myconfig-default.hpp>
-- Found Cython version 0.23
-- NumPy ver. 1.11.0 found (include: 
/usr/lib64/python2.7/site-packages/numpy/core/include)
-- checking for module 'scafacos'
--   package 'scafacos' not found
-- Boost version: 1.61.0
-- Found the following Boost libraries:
--   mpi
--   serialization
-- Boost version: 1.61.0
-- Found the following Boost libraries:
--   unit_test_framework
-- writing 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/myconfig-sample.hpp>
-- 
-- The following OPTIONAL packages have been found:

 * PythonInterp
 * FFTW3
 * HDF5
 * PkgConfig
 * Doxygen

-- The following REQUIRED packages have been found:

 * Threads
 * Cython
 * PythonLibs
 * NumPy
 * TCL
 * Boost
 * MPI

-- Configuring done
-- Generating done
-- Build files have been written to: 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/>
[  0%] Built target myconfig
[  0%] Built target EspressoConfig
Scanning dependencies of target MpiCallbacks_test
[  0%] Building CXX object 
src/core/unit_tests/CMakeFiles/MpiCallbacks_test.dir/MpiCallbacks_test.cpp.o
[  1%] Building CXX object 
src/core/unit_tests/CMakeFiles/MpiCallbacks_test.dir/__/MpiCallbacks.cpp.o
[  1%] Linking CXX executable MpiCallbacks_test
[  1%] Built target MpiCallbacks_test
Scanning dependencies of target Vector_test
[  2%] Building CXX object 
src/core/unit_tests/CMakeFiles/Vector_test.dir/Vector_test.cpp.o
[  2%] Linking CXX executable Vector_test
[  2%] Built target Vector_test
Scanning dependencies of target RuntimeError_test
[  2%] Building CXX object 
src/core/unit_tests/CMakeFiles/RuntimeError_test.dir/RuntimeError_test.cpp.o
[  2%] Linking CXX executable RuntimeError_test
[  2%] Built target RuntimeError_test
Scanning dependencies of target RunningAverage_test
[  2%] Building CXX object 
src/core/unit_tests/CMakeFiles/RunningAverage_test.dir/RunningAverage_test.cpp.o
[  2%] Linking CXX executable RunningAverage_test
[  2%] Built target RunningAverage_test
Scanning dependencies of target RuntimeErrorCollector_test
[  2%] Building CXX object 
src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/RuntimeErrorCollector_test.cpp.o
[  3%] Building CXX object 
src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/__/RuntimeErrorCollector.cpp.o
[  3%] Building CXX object 
src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/__/RuntimeError.cpp.o
[  3%] Linking CXX executable RuntimeErrorCollector_test
[  3%] Built target RuntimeErrorCollector_test
Scanning dependencies of target NumeratedContainer_test
[  3%] Building CXX object 
src/core/unit_tests/CMakeFiles/NumeratedContainer_test.dir/NumeratedContainer_test.cpp.o
[  3%] Linking CXX executable NumeratedContainer_test
[  3%] Built target NumeratedContainer_test
Scanning dependencies of target check_unit_tests
Test project 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src/core/unit_tests>
    Start 1: Vector_test
1/6 Test #1: Vector_test ......................***Failed    0.00 sec
    Start 2: RuntimeError_test
2/6 Test #2: RuntimeError_test ................***Failed    0.00 sec
    Start 3: RunningAverage_test
3/6 Test #3: RunningAverage_test ..............***Failed    0.00 sec
    Start 4: RuntimeErrorCollector_test
4/6 Test #4: RuntimeErrorCollector_test .......***Failed    0.00 sec
    Start 5: NumeratedContainer_test
5/6 Test #5: NumeratedContainer_test ..........***Failed    0.00 sec
    Start 6: MpiCallbacks_test
6/6 Test #6: MpiCallbacks_test ................***Failed    0.00 sec

0% tests passed, 6 tests failed out of 6

Total Test time (real) =   0.02 sec

The following tests FAILED:
          1 - Vector_test (Failed)
          2 - RuntimeError_test (Failed)
          3 - RunningAverage_test (Failed)
          4 - RuntimeErrorCollector_test (Failed)
          5 - NumeratedContainer_test (Failed)
          6 - MpiCallbacks_test (Failed)
Errors while running CTest
src/core/unit_tests/CMakeFiles/check_unit_tests.dir/build.make:57: recipe for 
target 'src/core/unit_tests/CMakeFiles/check_unit_tests' failed
make[3]: *** [src/core/unit_tests/CMakeFiles/check_unit_tests] Error 8
CMakeFiles/Makefile2:1657: recipe for target 
'src/core/unit_tests/CMakeFiles/check_unit_tests.dir/all' failed
make[2]: *** [src/core/unit_tests/CMakeFiles/check_unit_tests.dir/all] Error 2
CMakeFiles/Makefile2:76: recipe for target 'CMakeFiles/check.dir/rule' failed
make[1]: *** [CMakeFiles/check.dir/rule] Error 2
Makefile:129: recipe for target 'check' failed
make: *** [check] Error 2
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts



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