[Espressomd-maintainer] Build failed in Jenkins: master-nightly-mpich #350

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-nightly-mpich/350/changes>

Changes:

[phy79182] redesigned exclusions and added slice input

------------------------------------------
[...truncated 611 lines...]
[ 91%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/cuda_init_tcl.cpp.o
[ 91%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/reaction_field_tcl.cpp.o
[ 91%] Linking CXX shared library h5md.so
[ 91%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/ghmc_tcl.cpp.o
[ 91%] Built target h5md
[ 92%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/buckingham_tcl.cpp.o
[ 92%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/comforce_tcl.cpp.o
[ 92%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/galilei_tcl.cpp.o
Scanning dependencies of target espressomd
[ 92%] Built target espressomd
Scanning dependencies of target pypresso
[ 92%] Built target pypresso
[ 92%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/cos2_tcl.cpp.o
[ 93%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/p3m-dipolar_tcl.cpp.o
[ 93%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/statistics_correlation_tcl.cpp.o
[ 93%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/lb-boundaries_tcl.cpp.o
[ 93%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/bonded_coulomb_tcl.cpp.o
[ 93%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/soft_sphere_tcl.cpp.o
[ 94%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/rattle_tcl.cpp.o
[ 94%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/debye_hueckel_tcl.cpp.o
[ 94%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/particle_data_tcl.cpp.o
[ 94%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/bmhtf-nacl_tcl.cpp.o
[ 95%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/binary_file_tcl.cpp.o
[ 95%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/ljangle_tcl.cpp.o
[ 95%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/config_tcl.cpp.o
[ 95%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/collision_tcl.cpp.o
[ 96%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/initialize_interpreter.cpp.o
[ 96%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/umbrella_tcl.cpp.o
[ 96%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/topology_tcl.cpp.o
[ 96%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/main.cpp.o
[ 96%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/twist_stack_tcl.cpp.o
[ 97%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/integrate_tcl.cpp.o
[ 97%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/scriptsdir.cpp.o
[ 97%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/channels_tcl.cpp.o
[ 97%] Building CXX object 
src/tcl/CMakeFiles/Espresso.dir/statistics_observable_tcl.cpp.o
[ 98%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/pressure_tcl.cpp.o
[ 98%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/gb_tcl.cpp.o
[ 98%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/global_tcl.cpp.o
[ 98%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/tuning_tcl.cpp.o
[ 98%] Building CXX object src/tcl/CMakeFiles/Espresso.dir/statistics_tcl.cpp.o
[100%] Linking CXX executable ../../Espresso
[100%] Built target Espresso
+ make check
-- Config file: 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src/core/myconfig-default.hpp>
-- Found Cython version 0.23
-- NumPy ver. 1.11.0 found (include: 
/usr/lib64/python2.7/site-packages/numpy/core/include)
-- checking for module 'scafacos'
--   package 'scafacos' not found
-- Boost version: 1.61.0
-- Found the following Boost libraries:
--   mpi
--   serialization
-- Boost version: 1.61.0
-- Found the following Boost libraries:
--   unit_test_framework
-- writing 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/myconfig-sample.hpp>
-- 
-- The following OPTIONAL packages have been found:

 * PythonInterp
 * FFTW3
 * HDF5
 * PkgConfig
 * Doxygen

-- The following REQUIRED packages have been found:

 * Threads
 * Cython
 * PythonLibs
 * NumPy
 * TCL
 * Boost
 * MPI

-- Configuring done
-- Generating done
-- Build files have been written to: 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/>
[  0%] Built target myconfig
[  0%] Built target EspressoConfig
Scanning dependencies of target MpiCallbacks_test
[  0%] Building CXX object 
src/core/unit_tests/CMakeFiles/MpiCallbacks_test.dir/MpiCallbacks_test.cpp.o
[  1%] Building CXX object 
src/core/unit_tests/CMakeFiles/MpiCallbacks_test.dir/__/MpiCallbacks.cpp.o
[  1%] Linking CXX executable MpiCallbacks_test
[  1%] Built target MpiCallbacks_test
Scanning dependencies of target Vector_test
[  2%] Building CXX object 
src/core/unit_tests/CMakeFiles/Vector_test.dir/Vector_test.cpp.o
[  2%] Linking CXX executable Vector_test
[  2%] Built target Vector_test
Scanning dependencies of target RuntimeError_test
[  2%] Building CXX object 
src/core/unit_tests/CMakeFiles/RuntimeError_test.dir/RuntimeError_test.cpp.o
[  2%] Linking CXX executable RuntimeError_test
[  2%] Built target RuntimeError_test
Scanning dependencies of target RunningAverage_test
[  2%] Building CXX object 
src/core/unit_tests/CMakeFiles/RunningAverage_test.dir/RunningAverage_test.cpp.o
[  2%] Linking CXX executable RunningAverage_test
[  2%] Built target RunningAverage_test
Scanning dependencies of target RuntimeErrorCollector_test
[  2%] Building CXX object 
src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/RuntimeErrorCollector_test.cpp.o
[  3%] Building CXX object 
src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/__/RuntimeErrorCollector.cpp.o
[  3%] Building CXX object 
src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/__/RuntimeError.cpp.o
[  3%] Linking CXX executable RuntimeErrorCollector_test
[  3%] Built target RuntimeErrorCollector_test
Scanning dependencies of target NumeratedContainer_test
[  3%] Building CXX object 
src/core/unit_tests/CMakeFiles/NumeratedContainer_test.dir/NumeratedContainer_test.cpp.o
[  3%] Linking CXX executable NumeratedContainer_test
[  3%] Built target NumeratedContainer_test
Scanning dependencies of target check_unit_tests
Test project 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src/core/unit_tests>
    Start 1: Vector_test
1/6 Test #1: Vector_test ......................   Passed    0.01 sec
    Start 2: RuntimeError_test
2/6 Test #2: RuntimeError_test ................   Passed    0.01 sec
    Start 3: RunningAverage_test
3/6 Test #3: RunningAverage_test ..............   Passed    0.01 sec
    Start 4: RuntimeErrorCollector_test
4/6 Test #4: RuntimeErrorCollector_test .......   Passed    0.01 sec
    Start 5: NumeratedContainer_test
5/6 Test #5: NumeratedContainer_test ..........   Passed    0.01 sec
    Start 6: MpiCallbacks_test
6/6 Test #6: MpiCallbacks_test ................   Passed    0.01 sec

100% tests passed, 0 tests failed out of 6

Total Test time (real) =   0.07 sec
[  3%] Built target check_unit_tests
[  4%] Built target gen_pxiconfig
[  6%] Built target ObjectInFluid
Scanning dependencies of target EspressoCuda
[  6%] Linking CXX shared library libEspressoCuda.so
[  9%] Built target EspressoCuda
[  9%] Linking CXX shared library libActorCuda.so
[ 10%] Built target ActorCuda
[ 10%] Linking CXX shared library libActor.so
[ 11%] Built target Actor
[ 11%] Linking CXX shared library libImmersedBoundaryCuda.so
[ 11%] Built target ImmersedBoundaryCuda
[ 12%] Linking CXX shared library libImmersedBoundary.so
[ 13%] Built target ImmersedBoundary
[ 13%] Linking CXX shared library libEspressoCore.so
[ 46%] Built target EspressoCore
[ 47%] Linking CXX shared library _tcl.so
[ 47%] Built target _tcl
[ 47%] Linking CXX shared library interactions.so
[ 48%] Built target interactions
[ 48%] Linking CXX shared library cellsystem.so
[ 49%] Built target cellsystem
[ 49%] Linking CXX shared library galilei.so
[ 50%] Built target galilei
[ 51%] Linking CXX shared library _system.so
[ 51%] Built target _system
[ 52%] Linking CXX shared library particle_data.so
[ 52%] Built target particle_data
[ 52%] Linking CXX shared library debye_hueckel.so
[ 53%] Built target debye_hueckel
[ 53%] Linking CXX shared library electrostatics.so
[ 54%] Built target electrostatics
[ 55%] Linking CXX shared library utils.so
[ 55%] Built target utils
[ 55%] Linking CXX shared library grand_canonical.so
[ 55%] Built target grand_canonical
[ 55%] Linking CXX shared library magnetostatic_extensions.so
[ 56%] Built target magnetostatic_extensions
[ 56%] Linking CXX shared library h5md.so
[ 57%] Built target h5md
[ 57%] Linking CXX shared library reaction.so
[ 58%] Built target reaction
[ 58%] Linking CXX shared library lb.so
[ 59%] Built target lb
[ 60%] Linking CXX shared library minimize_energy.so
[ 60%] Built target minimize_energy
[ 60%] Linking CXX shared library magnetostatics.so
[ 61%] Built target magnetostatics
[ 61%] Linking CXX shared library code_info.so
[ 62%] Built target code_info
[ 62%] Linking CXX shared library scafacos.so
[ 63%] Built target scafacos
[ 63%] Linking CXX shared library electrostatic_extensions.so
[ 64%] Built target electrostatic_extensions
[ 64%] Linking CXX shared library diamond.so
[ 65%] Built target diamond
[ 65%] Linking CXX shared library actors.so
[ 65%] Built target actors
[ 65%] Linking CXX shared library analyze.so
[ 67%] Built target analyze
[ 67%] Linking CXX shared library thermostat.so
[ 68%] Built target thermostat
[ 68%] Linking CXX shared library electrokinetics.so
[ 69%] Built target electrokinetics
[ 69%] Linking CXX shared library cuda_init.so
[ 70%] Built target cuda_init
[ 70%] Linking CXX shared library integrate.so
[ 71%] Built target integrate
[ 71%] Linking CXX shared library _init.so
[ 72%] Built target _init
[ 72%] Linking CXX shared library polymer.so
[ 72%] Built target polymer
[ 72%] Built target espressomd
[ 72%] Built target pypresso
Scanning dependencies of target python_tests
[ 72%] Built target python_tests
Scanning dependencies of target check_python
Test project 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/testsuite/python>
      Start  1: bondedInteractions
 1/11 Test  #1: bondedInteractions ...............   Passed    0.12 sec
      Start  2: cellsystem
 2/11 Test  #2: cellsystem .......................   Passed    0.12 sec
      Start  3: coulomb_cloud_wall
 3/11 Test  #3: coulomb_cloud_wall ...............   Passed    5.24 sec
      Start  4: electrostaticInteractions
 4/11 Test  #4: electrostaticInteractions ........***Failed    1.83 sec
      Start  5: engine_langevin
 5/11 Test  #5: engine_langevin ..................   Passed    0.12 sec
      Start  6: engine_lb
 6/11 Test  #6: engine_lb ........................***Failed    0.24 sec
      Start  7: ewald_gpu
 7/11 Test  #7: ewald_gpu ........................***Failed    0.23 sec
      Start  8: magnetostaticInteractions
 8/11 Test  #8: magnetostaticInteractions ........***Failed    0.23 sec
      Start  9: nonBondedInteractions
 9/11 Test  #9: nonBondedInteractions ............   Passed    0.12 sec
      Start 10: p3m_gpu
10/11 Test #10: p3m_gpu ..........................***Failed    0.23 sec
      Start 11: particle
11/11 Test #11: particle .........................   Passed    0.12 sec

55% tests passed, 5 tests failed out of 11

Total Test time (real) =   8.60 sec

The following tests FAILED:
          4 - electrostaticInteractions (Failed)
          6 - engine_lb (Failed)
          7 - ewald_gpu (Failed)
          8 - magnetostaticInteractions (Failed)
         10 - p3m_gpu (Failed)
Errors while running CTest
testsuite/python/CMakeFiles/check_python.dir/build.make:57: recipe for target 
'testsuite/python/CMakeFiles/check_python' failed
make[3]: *** [testsuite/python/CMakeFiles/check_python] Error 8
CMakeFiles/Makefile2:174: recipe for target 
'testsuite/python/CMakeFiles/check_python.dir/all' failed
make[2]: *** [testsuite/python/CMakeFiles/check_python.dir/all] Error 2
CMakeFiles/Makefile2:76: recipe for target 'CMakeFiles/check.dir/rule' failed
make[1]: *** [CMakeFiles/check.dir/rule] Error 2
Makefile:129: recipe for target 'check' failed
make: *** [check] Error 2
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts