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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-mpich #3


From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mpich #346
Date: Tue, 21 Jun 2016 18:54:46 +0200 (CEST)

See <http://espressomd.org/jenkins/job/master-nightly-mpich/346/changes>

Changes:

[m.kuron] Demo with online visualization and MIDI control

[m.kuron] More features

[m.kuron] Temperature and pressure plots in LJ demo Visualization with holes in

[m.kuron] Phase diagram

[m.kuron] switchable NPT ensemble, not working

[phy79182] fixed LBFluid_GPU

[m.kuron] Integer division fix

[m.kuron] Switch to Mackie Control Universal MIDI protocol

[mkuron] Push the values to the controller when the MIDI device is changed

[kai] Python interface for [lbnode x y z print u] command.

[kai] Renamed method according to what it's actually doing.

[kai] Fixed include of get_u function.

[Florian Weik] utils: Added implementation of make_unique analog to 
std::make_shared,

[alexander.weyman] added lj-demo.py (Tag der Wissenschaft 2016)

[alexander.weyman] change particle coordinates (PBC)

[alexander.weyman] make lj-demo work without plugged in midi device

[alexander.weyman] last working version (tested under ubuntu)

[Florian Weik] communication: Fixed use after free bug (of the boost 
communicator).

[Florian Weik] communication: Added const cast to MPI calls for old mpi 
versions.

[mkuron] Importing the MIDI module

[Florian Weik] testsuite: Replaced tcl rng (rand()) by t_random.

[Florian Weik] testsuite: Speed up p3m stress test.

[Florian Weik] random: Apparently 0 is not a good seed, so we use 1 + mpi rank.

------------------------------------------
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  CXX      vmdsock.lo
  CXX      ghmc.lo
  CXX      Vector.lo
  CXX      SystemInterface.lo
  CXX      integrate_sd.lo
  CXX      EspressoSystemInterface.lo
  CXX      PdbParser.lo
  CXX      mpiio.lo
  CXX      MpiCallbacks.lo
  CXX      bmhtf-nacl.lo
  CXX      buckingham.lo
  CXX      cos2.lo
  CXX      dpd.lo
  CXX      gaussian.lo
  CXX      gb.lo
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  CXX      lj.lo
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  CXX      ljcos.lo
  CXX      ljcos2.lo
  CXX      ljgen.lo
  CXX      morse.lo
  CXX      soft_sphere.lo
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  CXX      angle.lo
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  CXX      angle_cosine.lo
  CXX      angle_cossquare.lo
  CXX      angledist.lo
  CXX      dihedral.lo
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  CXX      fene.lo
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  CXX      harmonic.lo
  CXX      quartic.lo
  CXX      overlap.lo
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  CXX      bonded_coulomb.lo
  CXX      subt_lj.lo
  CXX      object-in-fluid/oif_global_forces.lo
  CXX      object-in-fluid/oif_local_forces.lo
  CXX      object-in-fluid/out_direction.lo
  CXX      hydrogen_bond.lo
  CXX      twist_stack.lo
  CXX      debye_hueckel.lo
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  CXX      mdlc_correction.lo
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  CXX      p3m.lo
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  GEN      config-version.cpp
  NVCC     cuda_init_cuda.lo
  NVCC     cuda_common_cuda.lo
  NVCC     electrokinetics_cuda.lo
  NVCC     fd-electrostatics_cuda.lo
  NVCC     lbgpu_cuda.lo
  NVCC     p3m_gpu_cuda.lo
  NVCC     EspressoSystemInterface_cuda.lo
  NVCC     integrate_sd_cuda.lo
  NVCC     integrate_sd_cuda_kernel.lo
  NVCC     integrate_sd_cuda_debug.lo
  NVCC     integrate_sd_matrix.lo
  NVCC     integrate_sd_cuda_device.lo
  NVCC     actor/Mmm1dgpuForce_cuda.lo
  NVCC     actor/EwaldGPU_cuda.lo
  NVCC     actor/HarmonicWell_cuda.lo
  NVCC     immersed_boundary/ibm_cuda.lo
  NVCC     actor/DipolarDirectSum_cuda.lo
  NVCC     actor/HarmonicOrientationWell_cuda.lo
  NVCC     p3m_gpu_error_cuda.lo
  CXX      object-in-fluid/affinity.lo
  CXX      object-in-fluid/membrane_collision.lo
  CXX      immersed_boundary/ibm_main.lo
  CXX      immersed_boundary/ibm_triel.lo
  CXX      immersed_boundary/ibm_volume_conservation.lo
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  CXX      immersed_boundary/ibm_cuda_interface.lo
  CXX      actor/ActorList.lo
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  CXX      actor/Mmm1dgpuForce.lo
  CXX      actor/EwaldGPU.lo
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  CXX      config-version.lo
  CXXLD    libEspresso.la
make[5]: Leaving directory 
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make[4]: Leaving directory 
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make[3]: Leaving directory 
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Making all in tcl
make[3]: Entering directory 
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  CXX      bin_tcl.lo
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  CXX      energy_tcl.lo
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  CXX      global_tcl.lo
  CXX      grid_tcl.lo
  CXX      iccp3m_tcl.lo
  CXX      imd_tcl.lo
  CXX      initialize_interpreter.lo
  CXX      integrate_tcl.lo
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  CXX      lb-boundaries_tcl.lo
  CXX      lb_tcl.lo
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  CXX      object-in-fluid/oif_global_forces_tcl.lo
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  CXX      object-in-fluid/out_direction_tcl.lo
  CXX      debye_hueckel_tcl.lo
  CXX      elc_tcl.lo
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  CXX      maggs_tcl.lo
  CXX      mmm1d_tcl.lo
  CXX      mmm2d_tcl.lo
  CXX      p3m-dipolar_tcl.lo
  CXX      p3m_tcl.lo
  CXX      reaction_field_tcl.lo
  CXX      mdlc_correction_tcl.lo
  CXX      cuda_init_tcl.lo
  CXX      Espresso_install-scriptsdir.o
  CXX      Espresso_install-main.o
  NVCC     cuda_workaround.o
  CXX      Espresso-scriptsdir.o
  CXX      Espresso-main.o
  CXX      object-in-fluid/affinity_tcl.lo
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  CXX      actor/DipolarDirectSum_tcl.lo
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  CXXLD    libEspressoTcl.la
  CXXLD    Espresso.install
  CXXLD    Espresso
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld: 
warning: libmpi.so.1, needed by 
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/libboost_mpi-mt.so, may/ 
conflict with usrlibmpi.so.12/
lib64//usrgcc//lib64x86_64/-gccsuse/-x86_64linux-/suse4.8-/linux/.4.8.//....//....//....//x86_64.-.suse/-x86_64linux-/susebin-/linuxld/:bin
 /warningld::  libmpi.so.1warning:,  neededlibmpi.so.1 ,by  needed/ usrby/ 
lib64//usrgcc//lib64x86_64/-gccsuse/-x86_64-linuxsuse/-4.8linux//.4.8.//....//....//....//.lib64.//libboost_mpilib64-/mt.solibboost_mpi,-
 mt.somay,  conflictmay  withconflict  libmpi.so.12with
 /libmpi.so.12usr
/.lib64.//gcccore//x86_64-.suselibs-/linux/libEspresso.so4.8:/ .undefined. 
/.reference. /to. 
.`/boost.:.:/mpix86_64:-:susecommunicator-:linux:/communicatorbin(/intld :const 
&warning,:  boostlibmpi.so.1:,: mpineeded: :bycomm_create_kind )/'usr
/.lib64.//gcccore//x86_64.-libssuse/-libEspresso.solinux:/ 4.8undefined/ 
.reference. /to. .`/boost.:.:/mpi.::.communicator/:lib64:/operatorlibboost_mpi 
-intmt.so(,)  mayconst 'conflict
 with libmpi.so.12
../core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::communicator::communicator(int const&, 
boost::mpi::comm_create_kind)'
../core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::communicator::operator int() const'
collect2: error: ld returned 1 exit status
collect2: error: ld returned 1 exit status
Makefile:892: recipe for target 'Espresso.install' failed
make[3]: *** [Espresso.install] Error 1
make[3]: *** Waiting for unfinished jobs....
Makefile:888: recipe for target 'Espresso' failed
make[3]: *** [Espresso] Error 1
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src/tcl'>
Makefile:455: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src'>
Makefile:393: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src'>
Makefile:481: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts



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