Re: [Gnumed-devel] gnumed upgrade failure.

[Karsten Hilbert]

On Mon, Nov 25, 2013 at 11:32:40PM +0530, Vaibhav Banait wrote:

> So far , no success.

...

> Here are few errors I could trace back.
...
> 2013-11-25 22:41:36  WARNING   gm.bootstrapper 
> (<string>::become_pg_demon_user() #1463): running on broken OS -- can't 
> import pwd module

No need to worry.

> ERROR     gm.bootstrapper 
> (d:\workplace\gnumed-server.19.0\build\pyi.win32\gnumed\outpyz1.pyz\logging::exception()
>  #1088): cannot run import script [v19-import-form-templates.py]
> Traceback (most recent call last):
>   File "<string>", line 992, in import_data
>   File "..\sql\v18-v19\python\v19-import-form-templates.py", line 38, in run
>     conn = conn
>   File 
> "D:\workplace\gnumed-server.19.0\build\pyi.win32\gnumed\outPYZ1.pyz\Gnumed.pycommon.gmPG2",
>  line 1091, in file2bytea
> IOError: [Errno 2] No such file or directory: 
> '..\\sql\\v18-v19\\data\\v19-GNUmed-Gr\xc3\xbcnes_Rezept_template.tex'

This has been fixed in the 1.4.1/19.1 release. Please
retry with that version.

> [Error 32] The process cannot access the file because it is being used by 
> another process: 
> 'c:\\users\\dell\\appdata\\local\\temp\\audit-trail-schema.sql'

I am not sure we can do anything about that. It has
never been a problem though.

This log is already MUCH better. Here it is creating
the foreign keys you were lacking and it succeeds !

2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1136): 1 FK(s) exist: [#1 = 
clin.allergy_fk_episode_fkey] clin.allergy.fk_episode -> clin.episode.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1160): 1 FK(s) exist: [#1 = 
clin.allergy_fk_encounter_fkey] clin.allergy.fk_encounter -> clin.encounter.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1136): 1 FK(s) exist: [#1 = 
clin.clin_aux_note_fk_episode_fkey] clin.clin_aux_note.fk_episode -> 
clin.episode.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1160): 1 FK(s) exist: [#1 = 
clin.clin_aux_note_fk_encounter_fkey] clin.clin_aux_note.fk_encounter -> 
clin.encounter.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1136): 1 FK(s) exist: [#1 = 
clin.clin_narrative_fk_episode_fkey] clin.clin_narrative.fk_episode -> 
clin.episode.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1160): 1 FK(s) exist: [#1 = 
clin.clin_narrative_fk_encounter_fkey] clin.clin_narrative.fk_encounter -> 
clin.encounter.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1136): 1 FK(s) exist: [#1 = 
clin.lab_request_fk_episode_fkey] clin.lab_request.fk_episode -> clin.episode.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1160): 1 FK(s) exist: [#1 = 
clin.lab_request_fk_encounter_fkey] clin.lab_request.fk_encounter -> 
clin.encounter.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1138): adding FK: 
clin.hospital_stay.fk_episode -> clin.episode.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1162): adding FK: 
clin.hospital_stay.fk_encounter -> clin.encounter.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1138): adding FK: 
clin.procedure.fk_episode -> clin.episode.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1162): adding FK: 
clin.procedure.fk_encounter -> clin.encounter.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1136): 1 FK(s) exist: [#1 = 
clin.test_result_fk_episode_fkey] clin.test_result.fk_episode -> clin.episode.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1160): 1 FK(s) exist: [#1 = 
clin.test_result_fk_encounter_fkey] clin.test_result.fk_encounter -> 
clin.encounter.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1136): 1 FK(s) exist: [#1 = 
au.referral_fk_episode_fkey] au.referral.fk_episode -> clin.episode.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1160): 1 FK(s) exist: [#1 = 
au.referral_fk_encounter_fkey] au.referral.fk_encounter -> clin.encounter.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1138): adding FK: 
clin.substance_intake.fk_episode -> clin.episode.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1162): adding FK: 
clin.substance_intake.fk_encounter -> clin.encounter.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1136): 1 FK(s) exist: [#1 = 
clin.form_instances_fk_episode_fkey] clin.form_instances.fk_episode -> 
clin.episode.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1160): 1 FK(s) exist: [#1 = 
clin.form_instances_fk_encounter_fkey] clin.form_instances.fk_encounter -> 
clin.encounter.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1136): 1 FK(s) exist: [#1 = 
clin.clin_hx_family_fk_episode_fkey] clin.family_history.fk_episode -> 
clin.episode.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1160): 1 FK(s) exist: [#1 = 
clin.clin_hx_family_fk_encounter_fkey] clin.family_history.fk_encounter -> 
clin.encounter.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1136): 1 FK(s) exist: [#1 = 
clin.vaccination_fk_episode_fkey] clin.vaccination.fk_episode -> clin.episode.pk
2013-11-25 22:43:43  INFO      gm.bootstrapper 
(<string>::bootstrap_notifications() #1160): 1 FK(s) exist: [#1 = 
clin.vaccination_fk_encounter_fkey] clin.vaccination.fk_encounter -> 
clin.encounter.pk

Karsten
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