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14/16: gnu: Add r-biocset.
From: |
guix-commits |
Subject: |
14/16: gnu: Add r-biocset. |
Date: |
Wed, 18 Dec 2019 09:33:44 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 43b66e3f7c7628804faf0f336c903458d319f412
Author: Ricardo Wurmus <address@hidden>
Date: Wed Dec 18 15:25:38 2019 +0100
gnu: Add r-biocset.
* gnu/packages/bioconductor.scm (r-biocset): New variable.
---
gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c5ad292..8bd6bfe 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7318,3 +7318,36 @@ that metadata from R. The goal is to expose metadata
for data mining and
value-added functionality such as package searching, text mining, and
analytics on packages.")
(license license:expat)))
+
+(define-public r-biocset
+ (package
+ (name "r-biocset")
+ (version "1.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BiocSet" version))
+ (sha256
+ (base32
+ "1xcksnvjflrdarn8xqmgf0n6wbsjkq9jazqwp35i52vqcq4ic1j9"))))
+ (properties `((upstream-name . "BiocSet")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-dplyr" ,r-dplyr)
+ ("r-keggrest" ,r-keggrest)
+ ("r-plyr" ,r-plyr)
+ ("r-rlang" ,r-rlang)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-tibble" ,r-tibble)))
+ (home-page
+ "https://bioconductor.org/packages/BiocSet")
+ (synopsis
+ "Representing Different Biological Sets")
+ (description
+ "BiocSet displays different biological sets in a triple tibble format.
+These three tibbles are @code{element}, @code{set}, and @code{elementset}.
+The user has the abilty to activate one of these three tibbles to perform
+common functions from the @code{dplyr} package. Mapping functionality and
+accessing web references for elements/sets are also available in BiocSet.")
+ (license license:artistic2.0)))
- 04/16: gnu: Add r-graphite., (continued)
- 04/16: gnu: Add r-graphite., guix-commits, 2019/12/18
- 05/16: gnu: Add r-reactomepa., guix-commits, 2019/12/18
- 03/16: gnu: Add r-influencer., guix-commits, 2019/12/18
- 06/16: gnu: Add r-ebarrays., guix-commits, 2019/12/18
- 07/16: gnu: Add r-bioccasestudies., guix-commits, 2019/12/18
- 09/16: gnu: Add r-experimenthub., guix-commits, 2019/12/18
- 12/16: gnu: Add r-biocor., guix-commits, 2019/12/18
- 08/16: gnu: Add r-biocgraph., guix-commits, 2019/12/18
- 11/16: gnu: Add r-bioconcotk., guix-commits, 2019/12/18
- 13/16: gnu: Add r-biocpkgtools., guix-commits, 2019/12/18
- 14/16: gnu: Add r-biocset.,
guix-commits <=
- 10/16: gnu: Add r-multiassayexperiment., guix-commits, 2019/12/18
- 15/16: gnu: Add r-biocworkflowtools., guix-commits, 2019/12/18
- 16/16: gnu: Add r-biodist., guix-commits, 2019/12/18