[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
10/16: gnu: Add r-multiassayexperiment.
From: |
guix-commits |
Subject: |
10/16: gnu: Add r-multiassayexperiment. |
Date: |
Wed, 18 Dec 2019 09:33:43 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 06784793913c771512e1e095b57dd6d57b4144f7
Author: Ricardo Wurmus <address@hidden>
Date: Wed Dec 18 15:25:08 2019 +0100
gnu: Add r-multiassayexperiment.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): New variable.
---
gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 70ad6ed..6590f6e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7171,3 +7171,36 @@ has associated metadata, tags and date of modification.
The client creates
and manages a local cache of files retrieved enabling quick and reproducible
access.")
(license license:artistic2.0)))
+
+(define-public r-multiassayexperiment
+ (package
+ (name "r-multiassayexperiment")
+ (version "1.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MultiAssayExperiment" version))
+ (sha256
+ (base32
+ "0hqg0b0hd5msnb4jcn1nbfyy1n1llfkipy2ivwncivkmbdn8psp4"))))
+ (properties
+ `((upstream-name . "MultiAssayExperiment")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-tidyr" ,r-tidyr)))
+ (home-page "http://waldronlab.io/MultiAssayExperiment/")
+ (synopsis "Integration of multi-omics experiments in Bioconductor")
+ (description
+ "MultiAssayExperiment harmonizes data management of multiple assays
+performed on an overlapping set of specimens. It provides a familiar
+Bioconductor user experience by extending concepts from
+@code{SummarizedExperiment}, supporting an open-ended mix of standard data
+classes for individual assays, and allowing subsetting by genomic ranges or
+rownames.")
+ (license license:artistic2.0)))
- 05/16: gnu: Add r-reactomepa., (continued)
- 05/16: gnu: Add r-reactomepa., guix-commits, 2019/12/18
- 03/16: gnu: Add r-influencer., guix-commits, 2019/12/18
- 06/16: gnu: Add r-ebarrays., guix-commits, 2019/12/18
- 07/16: gnu: Add r-bioccasestudies., guix-commits, 2019/12/18
- 09/16: gnu: Add r-experimenthub., guix-commits, 2019/12/18
- 12/16: gnu: Add r-biocor., guix-commits, 2019/12/18
- 08/16: gnu: Add r-biocgraph., guix-commits, 2019/12/18
- 11/16: gnu: Add r-bioconcotk., guix-commits, 2019/12/18
- 13/16: gnu: Add r-biocpkgtools., guix-commits, 2019/12/18
- 14/16: gnu: Add r-biocset., guix-commits, 2019/12/18
- 10/16: gnu: Add r-multiassayexperiment.,
guix-commits <=
- 15/16: gnu: Add r-biocworkflowtools., guix-commits, 2019/12/18
- 16/16: gnu: Add r-biodist., guix-commits, 2019/12/18