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26/323: gnu: Add r-greylistchip.
From: |
guix-commits |
Subject: |
26/323: gnu: Add r-greylistchip. |
Date: |
Mon, 7 Dec 2020 15:12:44 -0500 (EST) |
rekado pushed a commit to branch wip-r
in repository guix.
commit 64f15cbafe34a3fb0c893c16d31ce3c345366875
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Wed Nov 18 16:47:44 2020 +0100
gnu: Add r-greylistchip.
* gnu/packages/bioconductor.scm (r-greylistchip): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 56d8036..d8db2ba 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1657,6 +1657,33 @@ effect sizes for a variety of GLM models, using
approximation of the
posterior for individual coefficients.")
(license license:gpl2)))
+(define-public r-greylistchip
+ (package
+ (name "r-greylistchip")
+ (version "1.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GreyListChIP" version))
+ (sha256
+ (base32
+ "1d1yvza1aw3vs3di6mrra5l52ig0p9bpzprrqvknjaz5i4yb8ma6"))))
+ (properties `((upstream-name . "GreyListChIP")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-mass" ,r-mass)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://bioconductor.org/packages/GreyListChIP")
+ (synopsis "Greylist artefact regions based on ChIP inputs")
+ (description "This package identifies regions of ChIP experiments with high
+signal in the input, that lead to spurious peaks during peak calling.")
+ (license license:artistic2.0)))
+
(define-public r-diffbind
(package
(name "r-diffbind")
- 05/323: gnu: r-biocversion: Update to 3.12.0., (continued)
- 05/323: gnu: r-biocversion: Update to 3.12.0., guix-commits, 2020/12/07
- 12/323: gnu: r-annotate: Update to 1.68.0., guix-commits, 2020/12/07
- 15/323: gnu: r-reportingtools: Update to 2.30.0., guix-commits, 2020/12/07
- 08/323: gnu: r-affycompatible: Update to 1.50.0., guix-commits, 2020/12/07
- 13/323: gnu: r-hpar: Update to 1.32.1., guix-commits, 2020/12/07
- 14/323: gnu: r-regioner: Update to 1.22.0., guix-commits, 2020/12/07
- 19/323: gnu: r-qvalue: Update to 2.22.0., guix-commits, 2020/12/07
- 20/323: gnu: Add r-rcppnumerical., guix-commits, 2020/12/07
- 18/323: gnu: r-oligo: Update to 1.54.0., guix-commits, 2020/12/07
- 23/323: gnu: Add r-etrunct., guix-commits, 2020/12/07
- 26/323: gnu: Add r-greylistchip.,
guix-commits <=
- 27/323: gnu: r-diffbind: Update to 3.0.7., guix-commits, 2020/12/07
- 39/323: gnu: r-goseq: Update to 1.42.0., guix-commits, 2020/12/07
- 47/323: gnu: r-destiny: Update to 3.4.0., guix-commits, 2020/12/07
- 35/323: gnu: r-bayseq: Update to 2.24.0., guix-commits, 2020/12/07
- 34/323: gnu: r-qdnaseq: Update to 1.26.0., guix-commits, 2020/12/07
- 30/323: gnu: r-chippeakanno: Update to 3.24.0., guix-commits, 2020/12/07
- 43/323: gnu: r-inspect: Update to 1.20.0., guix-commits, 2020/12/07
- 31/323: gnu: r-marray: Update to 1.68.0., guix-commits, 2020/12/07
- 36/323: gnu: r-riboprofiling: Update to 1.20.0., guix-commits, 2020/12/07
- 41/323: gnu: r-rots: Update to 1.18.0., guix-commits, 2020/12/07