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27/323: gnu: r-diffbind: Update to 3.0.7.
From: |
guix-commits |
Subject: |
27/323: gnu: r-diffbind: Update to 3.0.7. |
Date: |
Mon, 7 Dec 2020 15:12:44 -0500 (EST) |
rekado pushed a commit to branch wip-r
in repository guix.
commit 753032359909c3142761747696ace689f6e4c23a
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Wed Nov 18 16:48:25 2020 +0100
gnu: r-diffbind: Update to 3.0.7.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.7.
[propagated-inputs]: Add r-apeglm, r-ashr, and r-greylistchip; remove
r-edger.
---
gnu/packages/bioconductor.scm | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d8db2ba..ec2273c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1687,29 +1687,31 @@ signal in the input, that lead to spurious peaks during
peak calling.")
(define-public r-diffbind
(package
(name "r-diffbind")
- (version "2.16.2")
+ (version "3.0.7")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DiffBind" version))
(sha256
(base32
- "11y9kigdikqcd0cnksh306nsaadak0kgivk7773mv3yszrxxwzj1"))))
+ "0irhqsi6rrkrkc7dhwmfpqfd0mnigs17027czcx8vgbrbra4lcvd"))))
(properties `((upstream-name . "DiffBind")))
(build-system r-build-system)
(inputs
`(("zlib" ,zlib)))
(propagated-inputs
`(("r-amap" ,r-amap)
+ ("r-apeglm" ,r-apeglm)
+ ("r-ashr" ,r-ashr)
("r-biocparallel" ,r-biocparallel)
("r-deseq2" ,r-deseq2)
("r-dplyr" ,r-dplyr)
- ("r-edger" ,r-edger)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-ggrepel" ,r-ggrepel)
("r-gplots" ,r-gplots)
+ ("r-greylistchip" ,r-greylistchip)
("r-iranges" ,r-iranges)
("r-lattice" ,r-lattice)
("r-limma" ,r-limma)
- 12/323: gnu: r-annotate: Update to 1.68.0., (continued)
- 12/323: gnu: r-annotate: Update to 1.68.0., guix-commits, 2020/12/07
- 15/323: gnu: r-reportingtools: Update to 2.30.0., guix-commits, 2020/12/07
- 08/323: gnu: r-affycompatible: Update to 1.50.0., guix-commits, 2020/12/07
- 13/323: gnu: r-hpar: Update to 1.32.1., guix-commits, 2020/12/07
- 14/323: gnu: r-regioner: Update to 1.22.0., guix-commits, 2020/12/07
- 19/323: gnu: r-qvalue: Update to 2.22.0., guix-commits, 2020/12/07
- 20/323: gnu: Add r-rcppnumerical., guix-commits, 2020/12/07
- 18/323: gnu: r-oligo: Update to 1.54.0., guix-commits, 2020/12/07
- 23/323: gnu: Add r-etrunct., guix-commits, 2020/12/07
- 26/323: gnu: Add r-greylistchip., guix-commits, 2020/12/07
- 27/323: gnu: r-diffbind: Update to 3.0.7.,
guix-commits <=
- 39/323: gnu: r-goseq: Update to 1.42.0., guix-commits, 2020/12/07
- 47/323: gnu: r-destiny: Update to 3.4.0., guix-commits, 2020/12/07
- 35/323: gnu: r-bayseq: Update to 2.24.0., guix-commits, 2020/12/07
- 34/323: gnu: r-qdnaseq: Update to 1.26.0., guix-commits, 2020/12/07
- 30/323: gnu: r-chippeakanno: Update to 3.24.0., guix-commits, 2020/12/07
- 43/323: gnu: r-inspect: Update to 1.20.0., guix-commits, 2020/12/07
- 31/323: gnu: r-marray: Update to 1.68.0., guix-commits, 2020/12/07
- 36/323: gnu: r-riboprofiling: Update to 1.20.0., guix-commits, 2020/12/07
- 41/323: gnu: r-rots: Update to 1.18.0., guix-commits, 2020/12/07
- 50/323: gnu: r-copynumber: Update to 1.30.0., guix-commits, 2020/12/07