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303/323: gnu: Add r-scuttle.
From: |
guix-commits |
Subject: |
303/323: gnu: Add r-scuttle. |
Date: |
Wed, 9 Dec 2020 06:47:58 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 0e60dda0ae235044e692626d7b4532f63c591c5a
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Nov 21 10:23:56 2020 +0100
gnu: Add r-scuttle.
* gnu/packages/bioconductor.scm (r-scuttle): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7f188a4..3572b60 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8837,6 +8837,40 @@ factors for each cell, along with the usual metadata for
genes and
libraries.")
(license license:gpl3)))
+(define-public r-scuttle
+ (package
+ (name "r-scuttle")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scuttle" version))
+ (sha256
+ (base32
+ "1k8q3wzq6f6j6wkjp9fy9j214rv98kyvcxnpavk6blqgaxjqwdr6"))))
+ (properties `((upstream-name . "scuttle")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-beachmat" ,r-beachmat)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-delayedmatrixstats" ,r-delayedmatrixstats)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/scuttle")
+ (synopsis "Single-cell RNA-Seq analysis utilities")
+ (description
+ "This package provides basic utility functions for performing single-cell
+analyses, focusing on simple normalization, quality control and data
+transformations. It also provides some helper functions to assist development
+of other packages.")
+ (license license:gpl3)))
+
(define-public r-scater
(package
(name "r-scater")
- 265/323: gnu: r-vsn: Update to 3.58.0., (continued)
- 265/323: gnu: r-vsn: Update to 3.58.0., guix-commits, 2020/12/09
- 274/323: gnu: r-annotationhub: Update to 2.22.0., guix-commits, 2020/12/09
- 280/323: gnu: r-dirichletmultinomial: Update to 1.32.0., guix-commits, 2020/12/09
- 273/323: gnu: r-interactivedisplaybase: Update to 1.28.0., guix-commits, 2020/12/09
- 291/323: gnu: r-annaffy: Update to 1.62.0., guix-commits, 2020/12/09
- 290/323: gnu: r-sushi: Update to 1.28.0., guix-commits, 2020/12/09
- 271/323: gnu: r-aroma-light: Update to 3.20.0., guix-commits, 2020/12/09
- 289/323: gnu: r-gwascat: Update to 2.22.0., guix-commits, 2020/12/09
- 293/323: gnu: Add r-sparsematrixstats., guix-commits, 2020/12/09
- 295/323: gnu: r-interactionset: Update to 1.18.0., guix-commits, 2020/12/09
- 303/323: gnu: Add r-scuttle.,
guix-commits <=
- 306/323: gnu: r-biocviews: Update to 1.58.1., guix-commits, 2020/12/09
- 305/323: gnu: r-scran: Update to 1.18.0., guix-commits, 2020/12/09
- 310/323: gnu: r-ggcyto: Update to 1.18.0., guix-commits, 2020/12/09
- 311/323: gnu: Add r-catalyst., guix-commits, 2020/12/09
- 316/323: gnu: r-yarn: Update to 1.16.0., guix-commits, 2020/12/09
- 320/323: gnu: r-gqtlstats: Update to 1.21.3., guix-commits, 2020/12/09
- 212/323: gnu: r-ncdfflow: Fix r-rhdf5libs link., guix-commits, 2020/12/09
- 184/323: gnu: r-bioconcotk: Update to 1.10.0., guix-commits, 2020/12/09
- 215/323: gnu: r-deseq2: Update to 1.30.0., guix-commits, 2020/12/09
- 219/323: gnu: r-gseabase: Update to 1.52.0., guix-commits, 2020/12/09