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[bug#64250] [PATCH 13/15] gnu: Add r-nichenetr.
From: |
Navid Afkhami |
Subject: |
[bug#64250] [PATCH 13/15] gnu: Add r-nichenetr. |
Date: |
Fri, 23 Jun 2023 13:48:57 +0000 |
* gnu/packages/bioinformatics.scm (r-nichenetr): New variable.
---
gnu/packages/bioinformatics.scm | 57 +++++++++++++++++++++++++++++++++
1 file changed, 57 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 87e7c33b90..9de0470f7e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14800,6 +14800,63 @@ (define-public r-liana
interaction inference from scRNA-seq data.")
(license license:gpl3))))
+(define-public r-nichenetr
+ (let ((commit "cc3bcedfd6271df2e8ca85c8b771f7faa914cd3d")
+ (revision "1"))
+ (package
+ (name "r-nichenetr")
+ (version (git-version "1.1.1" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/saeyslab/nichenetr")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0jxkrk7cpwx0lbbgjrd885jxahdgk9ysfqp2drq22g486k6p2s9y"))))
+ (properties `((upstream-name . "nichenetr")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-caret
+ r-catools
+ r-circlize
+ r-complexheatmap
+ r-cowplot
+ r-data-table
+ r-diagrammer
+ r-dicekriging
+ r-dplyr
+ r-e1071
+ r-emoa
+ r-fdrtool
+ r-ggplot2
+ r-ggpubr
+ r-hmisc
+ r-igraph
+ r-limma
+ r-magrittr
+ r-matrix
+ r-mlrmbo
+ r-parallelmap
+ r-purrr
+ r-randomforest
+ r-readr
+ r-rocr
+ r-seurat
+ r-tibble
+ r-tidyr))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/saeyslab/nichenetr")
+ (synopsis "The R implementation of the NicheNet method")
+ (description
+ "The goal of NicheNet is to study intercellular communication from a
computational perspective.
+NicheNet uses human or mouse gene expression data of interacting cells
+as input and combines this with a prior model that integrates existing
+knowledge on ligand-to-target signaling paths. This allows to predict
+ligand-receptor interactions that might drive gene expression changes
+in cells of interest.")
+ (license license:gpl3))))
+
(define-public r-circus
(package
(name "r-circus")
--
2.34.1
- [bug#64250] [PATCH 04/15] gnu: Add r-mlr., (continued)
- [bug#64250] [PATCH 04/15] gnu: Add r-mlr., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 01/15] gnu: Add r-paramhelpers., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 05/15] gnu: Add r-mlrmbo., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 08/15] gnu: Add r-tidyft., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 10/15] gnu: Add r-dunn-test., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 12/15] gnu: Add r-dicekriging., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 03/15] gnu: Add r-parallelmap., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 07/15] gnu: Add r-diagrammer., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 06/15] gnu: Add r-emoa., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 09/15] gnu: Add r-ggfittext., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 13/15] gnu: Add r-nichenetr.,
Navid Afkhami <=
- [bug#64250] [PATCH 11/15] gnu: Add r-cellid., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 14/15] gnu: Add r-fsa., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 15/15] gnu: Add r-scriabin., Navid Afkhami, 2023/06/23