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[bug#64250] [PATCH 15/15] gnu: Add r-scriabin.
From: |
Navid Afkhami |
Subject: |
[bug#64250] [PATCH 15/15] gnu: Add r-scriabin. |
Date: |
Fri, 23 Jun 2023 13:48:59 +0000 |
* gnu/packages/bioinformatics.scm (r-scriabin): New variable.
---
gnu/packages/bioinformatics.scm | 54 +++++++++++++++++++++++++++++++++
1 file changed, 54 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9de0470f7e..ca24263c79 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9866,6 +9866,60 @@ (define-public r-sccustomize
visualization and analysis of single-cell data using R.")
(license license:gpl3+))))
+(define-public r-scriabin
+ (let ((commit "313d15e9150413e6bcad0947215da3a09c0257f5")
+ (revision "1"))
+ (package
+ (name "r-scriabin")
+ (version (git-version "0.0.0.9000" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/BlishLab/scriabin")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0k8khwcr3a281pa33h6l3wdk5igyqc4xknydiazk7qyf5w25g9zg"))))
+ (properties `((upstream-name . "scriabin")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-ade4
+ r-cellid
+ r-circlize
+ r-clipr
+ r-complexheatmap
+ r-complexheatmap
+ r-cowplot
+ r-dplyr
+ r-factoextra
+ r-fsa
+ r-genefilter
+ r-ggalluvial
+ r-ggfittext
+ r-ggplot2
+ r-ggsci
+ r-limma
+ r-magrittr
+ r-matrix
+ r-matrixstats
+ r-networkd3
+ r-nichenetr
+ r-pbapply
+ r-qlcmatrix
+ r-scales
+ r-scater
+ r-seurat
+ r-tibble
+ r-tidyft
+ r-wgcna))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/BlishLab/scriabin")
+ (synopsis "Single-cell resolved interaction analysis through binning")
+ (description
+ "Scriabin aims to provide a comprehensive view of cell-cell
communication (CCC).
+It achieves this without requiring subsampling or aggregation.")
+ (license license:expat))))
+
(define-public r-markdownhelpers
(let ((commit "793372d28ebed607cc1d35f909a1caedb2b41ffe")
(revision "1"))
--
2.34.1
- [bug#64250] [PATCH 08/15] gnu: Add r-tidyft., (continued)
- [bug#64250] [PATCH 08/15] gnu: Add r-tidyft., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 10/15] gnu: Add r-dunn-test., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 12/15] gnu: Add r-dicekriging., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 03/15] gnu: Add r-parallelmap., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 07/15] gnu: Add r-diagrammer., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 06/15] gnu: Add r-emoa., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 09/15] gnu: Add r-ggfittext., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 13/15] gnu: Add r-nichenetr., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 11/15] gnu: Add r-cellid., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 14/15] gnu: Add r-fsa., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 15/15] gnu: Add r-scriabin.,
Navid Afkhami <=