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[bug#64250] [PATCH 11/15] gnu: Add r-cellid.
From: |
Navid Afkhami |
Subject: |
[bug#64250] [PATCH 11/15] gnu: Add r-cellid. |
Date: |
Fri, 23 Jun 2023 13:48:55 +0000 |
* gnu/packages/bioconductor.scm (r-cellid): New variable.
---
gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
1 file changed, 44 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 00701c4463..78cab7171b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1436,6 +1436,50 @@ (define-public r-celldex
single-cell data or deconvolution of bulk RNA-seq.")
(license license:gpl3)))
+(define-public r-cellid
+ (package
+ (name "r-cellid")
+ (version "1.8.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "CelliD" version))
+ (sha256
+ (base32
+ "0vigvqjrlqbi5kviaj8qvyq3v8afgbc5pjrz7zmx2ckf4hdp0g03"))))
+ (properties `((upstream-name . "CelliD")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-data-table
+ r-biocparallel
+ r-fastmatch
+ r-fgsea
+ r-ggplot2
+ r-glue
+ r-irlba
+ r-matrix
+ r-matrixstats
+ r-pbapply
+ r-rcpp
+ r-rcpparmadillo
+ r-reticulate
+ r-rtsne
+ r-seurat
+ r-stringr
+ r-tictoc
+ r-singlecellexperiment
+ r-summarizedexperiment
+ r-umap))
+ (native-inputs (list r-knitr r-scater))
+ (home-page "https://bioconductor.org/packages/CelliD")
+ (synopsis
+ "Single cell gene signature extraction using multiple correspondence
analysis")
+ (description
+ "CelliD is a clustering-free method for extracting per-cell gene
signatures from scRNA-seq.
+CelliD allows unbiased cell identity recognition across different donors,
+tissues-of-origin, model organisms and single-cell omics protocols. The
+package can also be used to explore functional pathways enrichment in
+single cell data.")
+ (license license:gpl3)))
+
(define-public r-champdata
(package
(name "r-champdata")
--
2.34.1
- [bug#64250] [PATCH 01/15] gnu: Add r-paramhelpers., (continued)
- [bug#64250] [PATCH 01/15] gnu: Add r-paramhelpers., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 05/15] gnu: Add r-mlrmbo., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 08/15] gnu: Add r-tidyft., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 10/15] gnu: Add r-dunn-test., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 12/15] gnu: Add r-dicekriging., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 03/15] gnu: Add r-parallelmap., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 07/15] gnu: Add r-diagrammer., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 06/15] gnu: Add r-emoa., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 09/15] gnu: Add r-ggfittext., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 13/15] gnu: Add r-nichenetr., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 11/15] gnu: Add r-cellid.,
Navid Afkhami <=
- [bug#64250] [PATCH 14/15] gnu: Add r-fsa., Navid Afkhami, 2023/06/23
- [bug#64250] [PATCH 15/15] gnu: Add r-scriabin., Navid Afkhami, 2023/06/23