Re: parcellfun test issue on Mac OS 10.8, was Re: problems installing openmpi_ext

[Ben Abbott]

On Sep 11, 2013, at 9:17 AM, Francis Poulin wrote:

>> Alex,
>> 
>> Sorry for the late response.  I'm able to run the parcellfun_example using 
>> 3.6.4 from Macports.  My variants are +atlas+docs+fltk+gcc47+x11.
>> 
>>      
>> https://trac.macports.org/browser/trunk/dports/math/octave-devel/Portfile
>> 
>> Perhaps duplicating the configure options used by macports will clear things 
>> up for you?
>> 
>> Ben
> 
> Hello,
> 
> With my current macports installation of octave-devel, octave-general, 
> octave-bim, after I load the packages and try running parcellfun_example I 
> get that it cannot find one of the bim functions.
> 
> octave:5> pkg list
> 
> Package Name  | Version | Installation directory
> --------------+---------+-----------------------
>         bim *|   0.1.1 | /opt/local/share/octave/packages/bim-0.1.1
>         fpl *|   0.1.6 | /opt/local/share/octave/packages/fpl-0.1.6
>         general *|   1.3.2 | /opt/local/share/octave/packages/general-1.3.2
>         msh *|   0.1.1 | /opt/local/share/octave/packages/msh-0.1.1
>        splines *|   1.0.7 | /opt/local/share/octave/packages/splines-1.0.7
> 
> octave:6> parcellfun_example
> error: 'bim1a_laplacian' undefined near line 40 column 7
> error: called from:
> error:   /Users/fpoulin/parcellfun_example.m at line 40, column 5
> 
> 
> I can try the other options that Ben suggested but since those don't involve 
> bim I wouldn't think they would make a world of difference but could give it 
> a try.
> 
> Cheers, Francis

opps.  I responded to the wrong thread.  I'm seeing this same error.  The 
parcellfun_example script must be modified to use the version of the bim 
package provided by macports.  Mostly that means changing the names. 
Unfortunately, there are other problems.

parcellfun_example
error: BIM1Alaplacian: quotient: nonconformant arguments (op1 is 1x0, op2 is 
99x1)
error: called from:
error:   /opt/local/share/octave/packages/bim-0.1.1/BIM1Alaplacian.m at line 
60, column 7
error:   /Users/bpabbott/octave/parcellfun_example.m at line 41, column 5

I assume macports does not  provide the same version of bim as is expected by 
parcellfun_example?

The packages I have installed are ...

ver
----------------------------------------------------------------------
GNU Octave Version 3.6.4
GNU Octave License: GNU General Public License
Operating System: Darwin 11.4.2 Darwin Kernel Version 11.4.2: Thu Aug 23 
16:25:48 PDT 2012; root:xnu-1699.32.7~1/RELEASE_X86_64 x86_64
----------------------------------------------------------------------
Package Name   | Version | Installation directory
---------------+---------+-----------------------
          bim *|   0.1.1 | /opt/local/share/octave/packages/bim-0.1.1
      control *|   2.4.1 | /opt/local/share/octave/packages/control-2.4.1
          fpl *|   0.1.6 | /opt/local/share/octave/packages/fpl-0.1.6
      general *|   1.3.2 | /opt/local/share/octave/packages/general-1.3.2
miscellaneous  |   1.2.0 | /opt/local/share/octave/packages/miscellaneous-1.2.0
          msh *|   0.1.1 | /opt/local/share/octave/packages/msh-0.1.1
        optim  |   1.2.2 | /opt/local/share/octave/packages/optim-1.2.2
       signal  |   1.2.0 | /opt/local/share/octave/packages/signal-1.2.0
      specfun  |   1.1.0 | /opt/local/share/octave/packages/specfun-1.1.0
      splines *|   1.0.7 | /opt/local/share/octave/packages/splines-1.0.7
       struct  |  1.0.10 | /opt/local/share/octave/packages/struct-1.0.10

Ben