Re: parcellfun test issue on Mac OS 10.8, was Re: problems installing openmpi_ext

[Alexander Hansen]

On 9/11/13 9:54 AM, Alexander Hansen wrote:
> On 9/11/13 9:28 AM, c. wrote:
> > On 11 Sep 2013, at 17:06, Ben Abbott <address@hidden> wrote:
> >
> > > Ok.  That is easily fixed. First from a bash shell ...
> > >
> > >     sudo port uninstall octave-bim
> > >
> > > Then from macports octave-devel
> > >
> > > pkg install -forge bim
> > > pkg load bim
> > > parcellfun_example
> > > Elapsed time is 11.1524 seconds.
> > > parcellfun: child process 35648 created
> > > parcellfun: child process 35649 created
> > > parcellfun: 200/200 jobs done
> > > parcellfun: waiting for child process 35648 to close
> > > parcellfun: waiting for child process 35649 to close
> > > Elapsed time is 5.37539 seconds.
> > >
> > > Ben
> >
> > Ben,
> >
> > Thanks for helping with this!
> >
> > Although Francis might be happy
> > now with a working Octave installed
> > from MacPorts, it would be great if
> > we could also help Alexander fix the
> > problems with the Octave package in Fink.
> >
> > c.
>
> I'd like that, too. :-)
>
> I've got an unresolved bug report on Savannah (#38280) which appears
> also to be related to file I/O.
>
> I've just tried a build where the various *FLAGS variables are set to
> what Carlo used, but that didn't change the results.  There didn't seem
> to be substantial differences between his configure setup and Fink's
> otherwise.  This was still using clang[++] as the C[++] compiler.
>
> I'm trying a build using (FSF) g++-4.8 now.

Hi.  I've been a bit busy, but I'm still plugging away at this.  No 
success as of yet.

I've got the following configure options right now:

    config_opts = '--prefix=/sw' '--with-lapack=-L/sw/lib/lapack/3.4.2 
-lreflapack' '--with-blas=-L/sw/lib/lapack/3.4.2 -lrefblas' 
'--with-framework-carbon' '--with-x' '--x-libraries=/usr/X11/lib' 
'--x-includes=/usr/X11/include' '--with-magick=GraphicsMagick' 
'--with-qhull-includedir=/sw/include/libqhull' 
'--host=x86_64-apple-darwin' '--build=x86_64-apple-darwin' 
'--infodir=/sw/share/info' '--mandir=/sw/share/man' 
'--libexecdir=/sw/lib' '--enable-shared' '--enable-dl' 
'--disable-static' '--disable-docs' '--enable-dependency-tracking' 
'build_alias=x86_64-apple-darwin' 'host_alias=x86_64-apple-darwin' 
'CC=flag-sort -r gcc' 'CFLAGS=-D_THREAD_SAFE -pipe -O2 -MD -g' 
'LDFLAGS=-Wl,-dead_strip_dylibs -L/sw/lib' 'CPPFLAGS=-D_THREAD_SAFE 
-I/sw/include' 'CXX=flag-sort -r g++' 'CXXFLAGS=-pipe -O2 -MD -g 
-I/usr/X11/include' 'F77=/sw/bin/gfortran-fsf-4.8' 'FFLAGS=-pipe -O2'

and I've been trying to back out the various patches that I've applied. 
 If anybody's bored, those are visible via

http://fink.cvs.sourceforge.net/viewvc/fink/dists/10.7/stable/main/finkinfo/sci/

in the files octave-3.6.4.info and the various octave*.patch files.
--
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/