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04/13: gnu: Add r-basic4cseq.
From: |
guix-commits |
Subject: |
04/13: gnu: Add r-basic4cseq. |
Date: |
Mon, 13 Nov 2023 09:10:05 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 47a419564976aff55fed898c478ee43b96ab9159
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Mon Nov 6 12:06:40 2023 +0100
gnu: Add r-basic4cseq.
* gnu/packages/bioconductor.scm (r-basic4cseq): New variable.
Change-Id: I8a031dc010590a8ef4655633026c9dfac35213c3
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9196866404..303a3a2450 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -22591,6 +22591,37 @@ within a certain time frame are deleted. This aims to
reduce disk usage by
eliminating obsolete caches generated by old versions of packages.")
(license license:gpl3)))
+(define-public r-basic4cseq
+ (package
+ (name "r-basic4cseq")
+ (version "1.38.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Basic4Cseq" version))
+ (sha256
+ (base32 "1vlrrkg885w77w34m2q8hngr95hhh5bkw9hrzyhnp39igjkcwqx4"))))
+ (properties `((upstream-name . "Basic4Cseq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biostrings
+ r-bsgenome-ecoli-ncbi-20080805
+ r-catools
+ r-genomicalignments
+ r-genomicranges
+ r-rcircos))
+ (home-page "https://bioconductor.org/packages/Basic4Cseq")
+ (synopsis "Analyzing 4C-seq data")
+ (description
+ "Basic4Cseq is an R package for basic filtering, analysis and subsequent
+visualization of @acronym{4C-seq, circular chromosome conformation capture
+sequencing} data. Virtual fragment libraries can be created for any BSGenome
+package, and filter functions for both reads and fragments and basic quality
+controls are included. Fragment data in the vicinity of the experiment's
+viewpoint can be visualized as a coverage plot based on a running median
+approach and a multi-scale contact profile.")
+ (license license:lgpl3)))
+
(define-public r-basilisk-utils
(package
(name "r-basilisk-utils")
- branch master updated (951a1433f3 -> a0d337e79c), guix-commits, 2023/11/13
- 02/13: gnu: Add r-bags., guix-commits, 2023/11/13
- 05/13: gnu: Add r-basics., guix-commits, 2023/11/13
- 06/13: gnu: Add r-basicstarrseq., guix-commits, 2023/11/13
- 08/13: gnu: Add r-rcppdist., guix-commits, 2023/11/13
- 01/13: gnu: Add r-breastcancervdx., guix-commits, 2023/11/13
- 03/13: gnu: Add r-bsgenome-ecoli-ncbi-20080805., guix-commits, 2023/11/13
- 04/13: gnu: Add r-basic4cseq.,
guix-commits <=
- 07/13: gnu: Add r-bayesknockdown., guix-commits, 2023/11/13
- 10/13: gnu: Add r-bb., guix-commits, 2023/11/13
- 13/13: gnu: Add r-bcrank., guix-commits, 2023/11/13
- 12/13: gnu: Add r-bbcanalyzer., guix-commits, 2023/11/13
- 11/13: gnu: Add r-baynorm., guix-commits, 2023/11/13
- 09/13: gnu: Add r-bayesspace., guix-commits, 2023/11/13